View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_low_9 (Length: 338)
Name: NF10489_low_9
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 43396799 - 43396498
Alignment:
| Q |
20 |
ggaaaagaaaagaagaaatgtgacctcatcagtgaagagcaatgaagtagcatcaagaccagcatgatgaaacaaccatgcagcttgcttaagcttacac |
119 |
Q |
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| T |
43396799 |
ggaaaagaatagaagaaatgtgacctcatcagtgaagagcaatgaagtagcatcaagaccagcatgatgaaacaaccatgcagcttgcttaagcttacac |
43396700 |
T |
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| Q |
120 |
atatcacttctcttcacattcatcacaggcaccaccactgtcctctcttttccaccaccatcattctctttctgtctataacccaatagccatgcatgac |
219 |
Q |
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| T |
43396699 |
atatcacttctcttcacattcatcacaggcaccaccactgtcctctcttttccaccaccatcattctctttctgtctataacccaatagccatgcatggc |
43396600 |
T |
|
| Q |
220 |
aaatagcagccaccatcgatgccgtacctgcaccacatacaaataaattccacactttccaacactcccaaaatcaaatcaacaaaacaaattcagtcca |
319 |
Q |
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| T |
43396599 |
aaatagcagccaccatcgacgccgtacctgcaccacatacaaataaattccacactttccaacactcccaaaatcaaatcaacaaaacaaattcagtcca |
43396500 |
T |
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| Q |
320 |
tg |
321 |
Q |
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|| |
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| T |
43396499 |
tg |
43396498 |
T |
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