View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_high_13 (Length: 687)
Name: NF1048_high_13
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 30 - 500
Target Start/End: Original strand, 29008802 - 29009272
Alignment:
| Q |
30 |
catattggattcaagatcccaggcggaagcaccaccaacggtgtggttaccaccacaaacgcaacggaagagaattgaagccaagacgaccacgaacata |
129 |
Q |
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| T |
29008802 |
catattggattcaagatcccaggcggaagcaccaccaacggtgtggttaccaccacaaacgcaacggaagagaatcgaagccaagacgaccacgaacata |
29008901 |
T |
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| Q |
130 |
gctttcactgcccagactggcctcattttcctannnnnnnnnnnnnnnnnnnnnnnncacagagttaactatagcttcgattcaaattcttcatctaatt |
229 |
Q |
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| T |
29008902 |
gctttcactgcccagactggcctcattttcctacaaatcaaaccaaaaaatcaaaaacacagagttaactatagcttcgattcaaattcttcatctaatc |
29009001 |
T |
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| Q |
230 |
gaatgaatataacaccgtaacagtgtcaaatgaaattgaagaattagtttcagtgaaaatagtagcgtgcaaatgcaaattatatagaaatgtgaaggtg |
329 |
Q |
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| T |
29009002 |
gaatgaatacaacaccgtaacagtatcaaatgcaattgaagaattagtttcagtgaaaattgtagcgtgcaaatgcaaattatatagaaatgtgaaggtg |
29009101 |
T |
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| Q |
330 |
aatttgaataaaatgaaaccagaatcggaatttgaagaatttaatcaagaagttgaagcgaacatatatgatctttgcgcggttgaagagtttgttatga |
429 |
Q |
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| T |
29009102 |
aatttgaataaaatgaaaccagaatcggaatttgaagaatgtaatcaagaagttgaagcgaacctatatgatctttgcgcggttgaagagtttgttatga |
29009201 |
T |
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| Q |
430 |
attcagaacagagaatttggttatgtacctgcaaattcagaaagtgaaatctcagagcaatgaagaagaag |
500 |
Q |
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| T |
29009202 |
attcagaacagagaatgtggttatgtacctgcaaattcagaaagtgaaatctcagagcaatgaagaagaag |
29009272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 602 - 678
Target Start/End: Original strand, 29009481 - 29009557
Alignment:
| Q |
602 |
agggttttcgcgcctttatacagagtgatgagaattttggtttcgttttctgttatggagagtaaacttgtctgtgg |
678 |
Q |
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| T |
29009481 |
agggttttcgcgcctttatacagagtgatgagaattttggtttcgttttctgttacggagagtaaacttgtctgtgg |
29009557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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