View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1048_high_2 (Length: 861)

Name: NF1048_high_2
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1048_high_2
NF1048_high_2
[»] chr6 (1 HSPs)
chr6 (578-861)||(2921423-2921706)
[»] chr1 (3 HSPs)
chr1 (226-455)||(19586677-19586906)
chr1 (520-602)||(19586964-19587046)
chr1 (110-200)||(19586561-19586651)
[»] chr3 (3 HSPs)
chr3 (220-278)||(51042171-51042229)
chr3 (555-600)||(51041855-51041900)
chr3 (558-604)||(50192553-50192599)
[»] chr8 (1 HSPs)
chr8 (558-604)||(14248764-14248810)
[»] chr4 (6 HSPs)
chr4 (220-278)||(4913490-4913548)
chr4 (533-602)||(22905007-22905076)
chr4 (533-602)||(22956675-22956744)
chr4 (554-602)||(43441784-43441832)
chr4 (112-168)||(52005170-52005226)
chr4 (220-278)||(43441457-43441515)
[»] chr2 (1 HSPs)
chr2 (521-602)||(15316227-15316308)
[»] chr5 (1 HSPs)
chr5 (221-278)||(36988919-36988976)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 578 - 861
Target Start/End: Original strand, 2921423 - 2921706
Alignment:
Q  578 ttagacggagccggactcttccaaattagagagaataaaccccctcctttaaagccccaacaccctcttccacaaggaaaatggcttccaaaatgttata 677  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2921423 ttagacggagccggactcttccaaattagagagaataaaccccctcctttaaagccccaacaccctcttccacaaggaaaatggcttccaaaatgttata 2921522  T
Q  678 cgcggattttacggaaaaaattccatcatccacaaccgaccacacccacttgtcctcttcggtagtaaaaactacatcctccaagaggtccatcaaattc 777  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2921523 cccggattttacggaaaaaattccatcatccacaaccgaccacacccacttgtcctctttggtagtaaaaactacatcctccaagaggtccatcaaattc 2921622  T
Q  778 tcaaaaagatttgctttccacgaaaacggttgtctcctccaagataagttccaataccgtccccctccttgccccacacccact 861  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2921623 tcaaaaagatttgcttcccacgaaaacggttgtctcctccaagataagttccaataccgtccccctccttgccccacacccact 2921706  T

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Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 226 - 455
Target Start/End: Original strand, 19586677 - 19586906
Alignment:
Q  226 ttaaagatccaagcatttctttccttccaaatcatccaaagtgaagcatgccacactagccaaaaagcctttcgtaaccgcctaggatgcacctcttcac 325  Q
    ||||||||||  |||||||||||||||||||||| |||||  |  || ||||| || | |||||| ||||| || |  || ||||||| | | |  ||||    
T  19586677 ttaaagatccttgcatttctttccttccaaatcaaccaaatcgttgcgtgccaaaccaaccaaaatgccttccgcattcgtctaggattcgcattatcac 19586776  T
Q  326 cccaacaggcaaagtgagtgagcaaattatgaggagtgataaaattaatgcccaaccaatcaaacaccttatgccaaataagcaatgcaaactcacaatg 425  Q
     |||||| ||| | ||||||| ||| |  ||||||||||| ||||| || ||||||||||||||||||||  ||||||| | | |  || | ||||||||    
T  19586777 tccaacacgcataatgagtgaacaagtcgtgaggagtgatgaaatttattcccaaccaatcaaacaccttgcgccaaattaacgacacagattcacaatg 19586876  T
Q  426 caagaaaagatgtgaggttgtttcaatctc 455  Q
    |||||||||||| || ||||||||||||||    
T  19586877 caagaaaagatgagaagttgtttcaatctc 19586906  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 520 - 602
Target Start/End: Original strand, 19586964 - 19587046
Alignment:
Q  520 aagattcgatctcgtcggaatgcgatccaacattgccatccaagaaaaagcaaccaccttagacggagccggactcttccaaa 602  Q
    |||||| || ||||| ||||| |||||||| || ||||||||||| || || |||||||||||||| ||||||||||||||||    
T  19586964 aagattagacctcgtaggaatacgatccaaaatggccatccaagagaatgccaccaccttagacggcgccggactcttccaaa 19587046  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 19586561 - 19586651
Alignment:
Q  110 ggttccaacaccactcatagaaaagacacgacgaaatccgcaaccttgacaaagcccaataccaagagaccgccttaacctcatccaccac 200  Q
    ||||||||||||||||||| ||||  || || | |||||||||||| ||||  |||||| ||||||  ||||| |||| ||| ||||||||    
T  19586561 ggttccaacaccactcataaaaaaagcaagaggcaatccgcaacctagacagcgcccaaaaccaagccaccgctttaatctcgtccaccac 19586651  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 51042229 - 51042171
Alignment:
Q  220 tgattattaaagatccaagcatttctttccttccaaatcatccaaagtgaagcatgcca 278  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| ||| || |||||    
T  51042229 tgattattaaagatccttgcatttctttccttccaaatcatccaaattgatgcgtgcca 51042171  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 600
Target Start/End: Complemental strand, 51041900 - 51041855
Alignment:
Q  555 ccatccaagaaaaagcaaccaccttagacggagccggactcttcca 600  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||    
T  51041900 ccatccaagaaaaagcaacaactttagatggagccggactcttcca 51041855  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 604
Target Start/End: Original strand, 50192553 - 50192599
Alignment:
Q  558 tccaagaaaaagcaaccaccttagacggagccggactcttccaaatt 604  Q
    ||||||||| ||| |||||| |||| |||||||||||||||||||||    
T  50192553 tccaagaaagagccaccaccctagatggagccggactcttccaaatt 50192599  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 604
Target Start/End: Original strand, 14248764 - 14248810
Alignment:
Q  558 tccaagaaaaagcaaccaccttagacggagccggactcttccaaatt 604  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  14248764 tccaagaaagagccaccgccttagacggagccggactcttccaaatt 14248810  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 4913490 - 4913548
Alignment:
Q  220 tgattattaaagatccaagcatttctttccttccaaatcatccaaagtgaagcatgcca 278  Q
    ||||| ||||| ||||  |||||||||||||||||||||||||||| ||| ||||||||    
T  4913490 tgattcttaaaaatcctcgcatttctttccttccaaatcatccaaattgaggcatgcca 4913548  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 602
Target Start/End: Original strand, 22905007 - 22905076
Alignment:
Q  533 gtcggaatgcgatccaacattgccatccaagaaaaagcaaccaccttagacggagccggactcttccaaa 602  Q
    |||||||| || |||| ||  ||||||||||||||||| || || || ||||||||||||||||||||||    
T  22905007 gtcggaatacggtccatcaaggccatccaagaaaaagccacgactttggacggagccggactcttccaaa 22905076  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 602
Target Start/End: Original strand, 22956675 - 22956744
Alignment:
Q  533 gtcggaatgcgatccaacattgccatccaagaaaaagcaaccaccttagacggagccggactcttccaaa 602  Q
    |||||||| || |||| ||  ||||||||||||||||| || || || ||||||||||||||||||||||    
T  22956675 gtcggaatacggtccatcaaggccatccaagaaaaagccacgactttggacggagccggactcttccaaa 22956744  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 554 - 602
Target Start/End: Original strand, 43441784 - 43441832
Alignment:
Q  554 gccatccaagaaaaagcaaccaccttagacggagccggactcttccaaa 602  Q
    ||||||||||||||||| || || || ||||||||||||||||||||||    
T  43441784 gccatccaagaaaaagccacgactttggacggagccggactcttccaaa 43441832  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 52005170 - 52005226
Alignment:
Q  112 ttccaacaccactcatagaaaagacacgacgaaatccgcaaccttgacaaagcccaa 168  Q
    |||||||||||||||||||| || || |||| |||||||||||| ||||| ||||||    
T  52005170 ttccaacaccactcatagaataggcaagacgcaatccgcaacctagacaaggcccaa 52005226  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 43441457 - 43441515
Alignment:
Q  220 tgattattaaagatccaagcatttctttccttccaaatcatccaaagtgaagcatgcca 278  Q
    ||||| ||||| ||||  || ||||||||||||||||||||||||| ||| ||||||||    
T  43441457 tgattcttaaaaatcctcgcgtttctttccttccaaatcatccaaattgaggcatgcca 43441515  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 602
Target Start/End: Complemental strand, 15316308 - 15316227
Alignment:
Q  521 agattcgatctcgtcggaatgcgatccaacattgccatccaagaaaaagcaaccaccttagacggagccggactcttccaaa 602  Q
    ||||| ||||| || || |||||||| |  || ||||||||||| ||||| || |||||||||||||||||||| |||||||    
T  15316308 agatttgatctagtagggatgcgatcaataatagccatccaagagaaagccacaaccttagacggagccggacttttccaaa 15316227  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 36988976 - 36988919
Alignment:
Q  221 gattattaaagatccaagcatttctttccttccaaatcatccaaagtgaagcatgcca 278  Q
    |||||||||| ||||  |||||||||||||||||||||| |||||  | |||||||||    
T  36988976 gattattaaaaatcctcgcatttctttccttccaaatcaaccaaatagtagcatgcca 36988919  T

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