View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_high_22 (Length: 563)
Name: NF1048_high_22
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 30 - 555
Target Start/End: Original strand, 44945412 - 44945958
Alignment:
| Q |
30 |
atctacagctgcattttgagctaaactgttgccagctagaggataataatcagcctccactgcagattctacatcatcactctcctttctaaatgagtca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44945412 |
atctacagctgcattttgagctaaactgttgccagctagaggataataatcagcctccactgcagattctacatcatcactctcctttctgaatgagtca |
44945511 |
T |
|
| Q |
130 |
ctatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaagtaaacattggtataggcccataaatcc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44945512 |
ctatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaacaagcaaacattggtataggcccataaatcc |
44945611 |
T |
|
| Q |
230 |
ataggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgcctt |
329 |
Q |
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| T |
44945612 |
ataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaggagtaactagcgcgattcaatgtcttagcaatatattccatatatgcctt |
44945711 |
T |
|
| Q |
330 |
tttatctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattgcataaaaatgcaacaaggaagcagatggta |
429 |
Q |
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| T |
44945712 |
tttatctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattgcataaaaatgcaacaaggaagcagatggta |
44945811 |
T |
|
| Q |
430 |
atcgaaatgtgtttgattgaagaattactttgaagtatggaagat---------------------gaactgctagcaaaaattccaataagtgaactta |
508 |
Q |
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| T |
44945812 |
atcgaaatgtgtttgattgaagaagtactttgaagtatggaagatgatgtatcatcagaactccacgaactgctagcaaaaattccaataagtgaactta |
44945911 |
T |
|
| Q |
509 |
gtgtgatagctgttgtagaaagaagagtagacgccatgatattgttg |
555 |
Q |
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| T |
44945912 |
gtgtgatagctgttgtagaaagaagagtagacgccatgatattgttg |
44945958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 30 - 555
Target Start/End: Original strand, 44943758 - 44944301
Alignment:
| Q |
30 |
atctacagctgcattttgagctaaactgttgccagctagaggataataatcagcctccactgcagattctacatcatcactctcctttctaaatgagtca |
129 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
44943758 |
atctacagctgcattttgagctaagttgttaccagctaaaggataataatcagtctccactgcagattctatatcatcactctcctttctgaatgagtca |
44943857 |
T |
|
| Q |
130 |
ctatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaagtaaacattggtataggcccataaatcc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44943858 |
ctatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaacaagcaaacattggtataggcccataaatcc |
44943957 |
T |
|
| Q |
230 |
ataggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgcctt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44943958 |
ataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgcctt |
44944057 |
T |
|
| Q |
330 |
tttatctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattgcataaaaatgcaacaaggaagcagatggta |
429 |
Q |
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|||||||| |||||| || ||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44944058 |
tttatctcggagtgtaggtgcggtgattaaaaaactgacatgacaatagcaccttatagactgaacattgcataaaaatgcaacaaggaagcaaatggta |
44944157 |
T |
|
| Q |
430 |
atcgaaatgtgtttgattgaagaattactttgaagtatggaag------------------atgaactgctagcaaaaattccaataagtgaacttagtg |
511 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
44944158 |
atcgaaatacgtttgattgaagaagtactttgaagtatggaagatgtatcatcagaactccatgaactgctagcaaaaattccaataagtgaacttaatg |
44944257 |
T |
|
| Q |
512 |
tgatagctgttgtagaaagaagagtagacgccatgatattgttg |
555 |
Q |
| |
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|||| |||||||||| ||||||| |||||||||||||||||||| |
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| T |
44944258 |
tgattgctgttgtagcaagaagattagacgccatgatattgttg |
44944301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 422
Target Start/End: Original strand, 44940692 - 44940981
Alignment:
| Q |
133 |
tgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaagtaaacattggtataggcccataaatccata |
232 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| ||||||||| | || ||||| || || ||||| ||||||| ||||| |||||||||||||||| |
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| T |
44940692 |
tgaagatcccttgtgatttgagtggttgtatccaagaagtacaaaataaatgatgtgaagcaagaacaaataaacatgggtatgggcccataaatccata |
44940791 |
T |
|
| Q |
233 |
ggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgccttttt |
332 |
Q |
| |
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||| || |||| ||| ||| || || | ||| ||||| |||||||| | ||| |||| |||||||| || |||| |||||| ||| | ||||||| |
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| T |
44940792 |
ggacaagtggaattgacgtgtagaaagccctcaaaccaagagaccaagaataacttccacggttcaatgtttttgcaacatattcgataaaatccttttt |
44940891 |
T |
|
| Q |
333 |
atctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattgcataaaaatgcaacaaggaagca |
422 |
Q |
| |
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| |||||| || | |||||||| || || ||||| |||| |||||||||| || | ||| |||| |||||||||||||||||| |
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| T |
44940892 |
gccattgagtgcaggtgtattgattaagaaactcacatgtgcatagtatcttatagattgcatattacatagaaatgcaacaaggaagca |
44940981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 479 - 555
Target Start/End: Original strand, 44941059 - 44941135
Alignment:
| Q |
479 |
tgctagcaaaaattccaataagtgaacttagtgtgatagctgttgtagaaagaagagtagacgccatgatattgttg |
555 |
Q |
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|||| ||||||| |||||| ||||||||||||||||| |||||||||| || |||||||| ||||| ||||||||| |
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| T |
44941059 |
tgcttgcaaaaactccaattagtgaacttagtgtgattgctgttgtagctagtagagtagatgccattatattgttg |
44941135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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