View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_high_24 (Length: 547)
Name: NF1048_high_24
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 120 - 533
Target Start/End: Complemental strand, 43574826 - 43574413
Alignment:
| Q |
120 |
aatttggattaccttaaattaatgtgtgcaggaatcaacaatcggagcggcatttttcacacaggttttgtctttaaatgaagccactgtgaagtttgat |
219 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43574826 |
aatttgaattaccttaaatgaatgtgtgcaggaatcaacaatcggagccgcatttttcacacaggttttgtctttaaatgaagccactgtgaagtttgat |
43574727 |
T |
|
| Q |
220 |
atatgggacacagcagggcaagaacgataccacagtttggctcccatgtattatcgtggctctgctgctgctatagttgtatatgacattacaagcatgg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43574726 |
atatgggacacagcagggcaagaacgataccacagtttggctcccatgtattatcgtggctctgctgctgctatagttgtatatgacattacaagcatgg |
43574627 |
T |
|
| Q |
320 |
taactaaaatccactttataagtgatatttatggcagcaatttataggcaatcatttttatttagcttgtgatgattagttgtttgaaatatgtacttga |
419 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43574626 |
taactaaaatccactttataagtgatatttatggtagcaatttataggcaatcatttttatttagcttgtgatgattagttgtttgaaatatgtacttga |
43574527 |
T |
|
| Q |
420 |
aagcaaagaattttcgttcacatgacctgtcacgaagctgttcaataaagataacaataattgattgtcatgaatgatatataatagaatgtgtaatgtt |
519 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43574526 |
aagcaaagaattttcgttcgcatgacctgtcacgaagctgttcaataaagataacaataattgattgtcatgaatgatatataatagaatgtgtaatgtt |
43574427 |
T |
|
| Q |
520 |
tatgttattgcatc |
533 |
Q |
| |
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|||||||||||||| |
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| T |
43574426 |
tatgttattgcatc |
43574413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 149 - 272
Target Start/End: Complemental strand, 43920509 - 43920386
Alignment:
| Q |
149 |
aggaatcaacaatcggagcggcatttttcacacaggttttgtctttaaatgaagccactgtgaagtttgatatatgggacacagcagggcaagaacgata |
248 |
Q |
| |
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||||| |||| || ||||| || ||||||||||| | || || ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
43920509 |
aggaaccaaccataggagctgcttttttcacacaaatattatcattatctgaagccactgtgaagtttgacatatgggacacagcaggacaagaacgata |
43920410 |
T |
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| Q |
249 |
ccacagtttggctcccatgtatta |
272 |
Q |
| |
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|| ||||||||||| |||||||| |
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| T |
43920409 |
tcatagtttggctcctatgtatta |
43920386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 145 - 308
Target Start/End: Original strand, 28988414 - 28988577
Alignment:
| Q |
145 |
gtgcaggaatcaacaatcggagcggcatttttcacacaggttttgtctttaaatgaagccactgtgaagtttgatatatgggacacagcagggcaagaac |
244 |
Q |
| |
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||||||||||||||||| || || ||||||||| | ||| || | ||||||| || || || || ||||| || ||||||||||||||||||||| |
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| T |
28988414 |
gtgcaggaatcaacaataggggcagcatttttctcgcagacattagcagtaaatgacgcaacggttaaatttgagatttgggacacagcagggcaagaaa |
28988513 |
T |
|
| Q |
245 |
gataccacagtttggctcccatgtattatcgtggctctgctgctgctatagttgtatatgacat |
308 |
Q |
| |
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||||||| || ||||||||||||||||| | ||| | |||||||||||| |||| |||||||| |
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|
| T |
28988514 |
gataccatagcttggctcccatgtattacagaggcgcagctgctgctataattgtctatgacat |
28988577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 148 - 311
Target Start/End: Original strand, 32677450 - 32677613
Alignment:
| Q |
148 |
caggaatcaacaatcggagcggcatttttcacacaggttttgtctttaaatgaagccactgtgaagtttgatatatgggacacagcagggcaagaacgat |
247 |
Q |
| |
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|||||||||||||| || || ||||||||| | ||| ||| | ||||||| ||||| ||||| ||||| || |||||||||||||| ||||| ||| |
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| T |
32677450 |
caggaatcaacaataggggcagcatttttctcccagacgttggcagtaaatgacgccacagtgaaatttgagatttgggacacagcaggacaagagagat |
32677549 |
T |
|
| Q |
248 |
accacagtttggctcccatgtattatcgtggctctgctgctgctatagttgtatatgacattac |
311 |
Q |
| |
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|||| || || ||||||||||| ||| | ||| ||||||||||||| |||| ||||| ||||| |
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| T |
32677550 |
accatagcttagctcccatgtactatagaggcgctgctgctgctatcattgtctatgatattac |
32677613 |
T |
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