View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_high_33 (Length: 426)
Name: NF1048_high_33
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 7831648 - 7831932
Alignment:
| Q |
9 |
agcacagagaaaggatgtacagaatgaagagatgtgtcaagagaaaccgagaggaactggagagagtttgttctggaaaggagtcgaagatgaagtctca |
108 |
Q |
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| T |
7831648 |
agcacagagaaaggatgtatagaatgaagagatgtgtcaagagaaaccgagaggaactggagagagtttgttctggaaaggagccgaagatgaagtctca |
7831747 |
T |
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| Q |
109 |
gctccaagacgtcgctattggggaagcgttgagttacaagatggagatccacttgtttggagaagctggaatgggaaagaaaccttttgggagagggtga |
208 |
Q |
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| T |
7831748 |
gctccaagacgtcgctattggggaagcgttgagttacaagatggagatccacttgtttggagaagctggaatgggaaagaaaccttttgggagagggtga |
7831847 |
T |
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| Q |
209 |
gaaatattgttattctgttgaaatgccaaaattgttctgtagaggaagcttcaagctcaagtaatgtagagtatttggatcctga |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7831848 |
gaaatattgttattctgttgaaatgccaaaattgttctgtagaggaagcttcaagctcaagtaatgtagagtatttggatcctga |
7831932 |
T |
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