View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1048_high_35 (Length: 415)
Name: NF1048_high_35
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_high_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 179 - 399
Target Start/End: Complemental strand, 42983948 - 42983728
Alignment:
| Q |
179 |
aaaattttgagaaagataaacataaattgtaaaataagaaatttatcttctcccaaaaatttagataaagataaacacaaatcgtaaaataagaaagaaa |
278 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42983948 |
aaaattttgagaaagataaacataaatcgtaaaataagaaatttatcttctcccaaaaatttagataaagataaacacaaatcgtaaaataagaaagaaa |
42983849 |
T |
|
| Q |
279 |
tagacaatgaatgaaagagatggctcgaattcaattttacatggtatatcactttgtctaagagaattaaataaaaatgctttatatatactctctctac |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42983848 |
tagacaatgaatgaaagagatggctcgaattcaattttacatggtatatcactttgtctaagagaattaaataaaaatgctttatatatactctctctac |
42983749 |
T |
|
| Q |
379 |
cccatatgtaagcccctttta |
399 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42983748 |
cccatatgtaagcccctttta |
42983728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 42984126 - 42984033
Alignment:
| Q |
1 |
tacgacaacataattttctaccgtacttttacatgtcctaaggccataccaaacacattgtacatcaacatgattttatgcaaaatggtctctc |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42984126 |
tacgacaacataattttctaccgtacttttacatgtcctaaggccataccaaacacattgtacatcaacgtgattttatgcaaaatggtctctc |
42984033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University