View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_high_36 (Length: 409)
Name: NF1048_high_36
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_high_36 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 27 - 409
Target Start/End: Complemental strand, 26449631 - 26449249
Alignment:
| Q |
27 |
aatttacatcatcttctgcaatctaatgtggatacctacatcaaagattcaaattggaatgttcctcaagcttctttgcctgcatatcctgctttgcagc |
126 |
Q |
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| T |
26449631 |
aatttacatcatcttctgcaatctaatgtggatacctacatcaaagattcaaattggaatgttcctcaagcttttttggttgcatattctgctttggagc |
26449532 |
T |
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| Q |
127 |
agaaactattgttgactactatacctattttccctaaagaagataaactaatatagaaagcctctcatgatggaaatctagcttttaaagacgcatatct |
226 |
Q |
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| T |
26449531 |
aaaaactattgatgactactatacctattgtccctaaagaagataaactaatatggaaagcctctcatgatggaaatttagcttttaaagacgcatatct |
26449432 |
T |
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| Q |
227 |
cttcctgacttccaatcagcctcagaacatcagttgggccaaagtcatttggcacattgctatccctccttctaagtccgtgcttgtttggagactgttg |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26449431 |
cttcctgacttccaatcagcctcagaacatcagttgggccaaagtcatttggcacattgctatccctccttctaagtccttgcttgtttggagactgttg |
26449332 |
T |
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| Q |
327 |
cataacaagcttcctacagatgataacctctctcttagaggctttcatactacatccatttgcaatctctgtggtgctgctca |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
26449331 |
cataacaagcttcctacagatgataacctctctcttagaggctgtcatactacatccatttgcaatctctgtagtgctgctca |
26449249 |
T |
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