View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1048_high_4 (Length: 744)

Name: NF1048_high_4
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1048_high_4
NF1048_high_4
[»] chr1 (1 HSPs)
chr1 (51-715)||(39379456-39380119)
[»] chr4 (14 HSPs)
chr4 (349-666)||(3565059-3565376)
chr4 (118-326)||(3564787-3564992)
chr4 (118-303)||(3556769-3556954)
chr4 (350-666)||(3557042-3557358)
chr4 (153-308)||(3573456-3573610)
chr4 (517-665)||(1686724-1686872)
chr4 (140-303)||(1687154-1687317)
chr4 (349-427)||(3573296-3573374)
chr4 (353-427)||(1686950-1687024)
chr4 (184-304)||(3561795-3561915)
chr4 (526-598)||(3573134-3573206)
chr4 (526-581)||(11849195-11849250)
chr4 (616-666)||(3561396-3561446)
chr4 (529-562)||(3561512-3561545)
[»] chr7 (6 HSPs)
chr7 (526-581)||(29074553-29074608)
chr7 (526-581)||(29106288-29106343)
chr7 (529-571)||(29858913-29858955)
chr7 (527-581)||(29880752-29880806)
chr7 (529-570)||(12820674-12820715)
chr7 (536-581)||(29898858-29898903)


Alignment Details
Target: chr1 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 51 - 715
Target Start/End: Complemental strand, 39380119 - 39379456
Alignment:
Q  51 ctcatttcacaatttcaacggttcaatataacactccggcgaaggtgcattggcattggaaatcgttaacaatcagcgatgactacaactccgtcgccgg 150  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39380119 ctcatttcacactttcaacagttcaatatatcactccggcgaaggtgcattggcattggaaatcgttaacaatcagcgatgactacaactccgtcgccgc 39380020  T
Q  151 tgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcat 250  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39380019 tgtttttctccgacgatcttctcaccgagatcctttcgttacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcat 39379920  T
Q  251 ttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaacacttcacactcataactgaataccctgataatgtttatgag 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||    
T  39379919 ttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaacacttcacactcataactgaataccctgataatgattac-ag 39379821  T
Q  351 tatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattgagccaaaaagattgttctcgttta 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39379820 tatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattgagccagaaagattgttctcgttta 39379721  T
Q  451 gtcggttcctgtaatggatttatctgtttagttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatggaacc 550  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379720 gtcggttcctgtaatggattggtctgtttagttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatggaacc 39379621  T
Q  551 cagccactaggaaaatatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgattttggttgtgataattccactggaacttttaaagt 650  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39379620 cagccactaggaaaacatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgattttggttgtgataattccactgaaacttttaaagt 39379521  T
Q  651 ggttgcgtcacgttaccttggcgtcgacgaagaattgacaacccatgtgagagttttcagtttgg 715  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  39379520 ggttgcgtcacgttaccttggcgtcggcgaagaattgacaaccgatgtgagagttttcagtttgg 39379456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 5e-55; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 349 - 666
Target Start/End: Original strand, 3565059 - 3565376
Alignment:
Q  349 agtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattgagccaaaaagattgttctcgtt 448  Q
    |||||||||||||| |||||||||||| ||||||||||||| || |||||  |||||||||||||||||| | | ||||   ||||||| || ||| ||     
T  3565059 agtatcattccatatcctatacctcgtttactcgataacccgtcatttacggttgttgctgatcctcactctatgttgaatgaaaaagactgctctggta 3565158  T
Q  449 tagtcggttcctgtaatggatttatctgtttagttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatggaa 548  Q
    |||  |||| ||| ||||| || ||||||||   |||| |||||| |  ||||||||| | |    |   |||||||||||||||| |||||||||||||    
T  3565159 tagctggtttctgcaatgggttgatctgtttgactggttatcgtttcatttatggttctgctgatactgaatgttatgagtactggctccgtttatggaa 3565258  T
Q  549 cccagccactaggaaaatatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgattttggttgtgataattccactggaacttttaaa 648  Q
    |||||| |||||||||||||||| |||||||||||||||| |||||  |   | ||| |||||| ||| |||||||||||||||||| ||||||||||||    
T  3565259 cccagctactaggaaaatatctccaaaaattggttgttttcgtgatcttcatagtttcgtcttcaattgtggttgtgataattccaccggaacttttaaa 3565358  T
Q  649 gtggttgcgtcacgttac 666  Q
    ||||||||||||||||||    
T  3565359 gtggttgcgtcacgttac 3565376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 118 - 326
Target Start/End: Original strand, 3564787 - 3564992
Alignment:
Q  118 aacaatcagcgatgactacaactccgtcgccggtgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgatt 217  Q
    |||||||||| ||| ||||   ||| ||||||| |||||||||||| ||||| ||| ||  |||||| || ||||||||||||||||| || ||||| ||    
T  3564787 aacaatcagccatgtctactcgtccatcgccggcgttcttctccgatgatctcctcgccgtgatcctctcgttacttcctgtaaaatcacttcttcgttt 3564886  T
Q  218 caaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaacacttcaca 317  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||  ||| ||||| |||||||| ||||   ||| ||||||||    
T  3564887 caaatgtgtaagtaatccttggaacactctcatttccgatcccaattttgtgaaattccatctcatgaaatcaaaatcacaaaat---caatacttcaca 3564983  T
Q  318 ctcataact 326  Q
    || ||||||    
T  3564984 ctaataact 3564992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 118 - 303
Target Start/End: Original strand, 3556769 - 3556954
Alignment:
Q  118 aacaatcagcgatgactacaactccgtcgccggtgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgatt 217  Q
    |||||||||| ||| |||| | |||||||||||||||||||||||| ||||| |||  | ||||||||||||||||| |||| |||||||||||||||||    
T  3556769 aacaatcagccatgtctacgattccgtcgccggtgttcttctccgatgatctcctcgtcgagatcctttcattactttctgtgaaatctctacttcgatt 3556868  T
Q  218 caaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatc 303  Q
     | ||| ||||| ||  |||||||  |||| ||||| |||||||||||||| ||||| ||  |||||| || |||||||| |||||    
T  3556869 tagatgcgtaagtaagtcttggaacgctctaatttctgatcccaattttgtgaaattccatctcaagagatcaaaatcacaaaatc 3556954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 350 - 666
Target Start/End: Original strand, 3557042 - 3557358
Alignment:
Q  350 gtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattgagccaaaaagattgttctcgttt 449  Q
    |||||||||||||||||||||| ||| ||||||||||||| || ||||||||| |  ||||||||| || ||||||||   ||||||| || ||| || |    
T  3557042 gtatcattccataccctataccccgtttactcgataacccgtcctttacccttatcactgatcctcgctctctattgaatgaaaaagactgctctggtat 3557141  T
Q  450 agtcggttcctgtaatggatttatctgtttagttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatggaac 549  Q
    ||  |||||||| ||||| || || |||||   |||| |||||| |  |||| | |||| |   |    ||  ||||| |||||| | ||||||||||||    
T  3557142 agcaggttcctgcaatgggttgatttgtttgactggttatcgttccatttattggtccgatgatgatgaattatatgactactggctacgtttatggaac 3557241  T
Q  550 ccagccactaggaaaatatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgattttggttgtgataattccactggaacttttaaag 649  Q
    |||||||||||||||||||||| |||||||||||||||| |||||  |     ||| |||||| |||||||||||||| |||| || |  ||||||||||    
T  3557242 ccagccactaggaaaatatctccaaaaattggttgttttcgtgatcttcctggtttcgtcttcaattttggttgtgatgattctaccgacacttttaaag 3557341  T
Q  650 tggttgcgtcacgttac 666  Q
    ||||||| |||||||||    
T  3557342 tggttgcatcacgttac 3557358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 153 - 308
Target Start/End: Complemental strand, 3573610 - 3573456
Alignment:
Q  153 ttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcattt 252  Q
    |||||||| |||||||| ||||| | | ||||||||||||||||||| ||||| || ||||| |||||||||||||| ||||||||||| ||||||||||    
T  3573610 ttcttctctgacgatctcctcacta-gttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt 3573512  T
Q  253 ccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaa 308  Q
    |||||||||||||  | |||||  |  ||||||||| |||||||| ||||||||||    
T  3573511 ccgatcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaa 3573456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 517 - 665
Target Start/End: Complemental strand, 1686872 - 1686724
Alignment:
Q  517 tcatgttatgagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattggttgtttttgtgattctggcatttttgtcttcgatt 616  Q
    |||||||| || ||| ||||||||||||||||||| |||||||||||||||||||||| |||||| | |||| |||||     |  |||  ||||| |||    
T  1686872 tcatgttacgaataccggttccgtttatggaacccggccactaggaaaatatctcaaataattgggtcttttcgtgatgtaaacggtttcatcttcaatt 1686773  T
Q  617 ttggttgtgataattccactggaacttttaaagtggttgcgtcacgtta 665  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  1686772 ttggttgtgataattccactggcacttttaaagtggttgcgtcatgtta 1686724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 140 - 303
Target Start/End: Complemental strand, 1687317 - 1687154
Alignment:
Q  140 tccgtcgccggtgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttgg 239  Q
    ||||||||||||||||||||| || ||||| |||  | ||||||||||||||||| |||| |||||||| |||||||||| ||| ||||| ||  |||||    
T  1687317 tccgtcgccggtgttcttctctgatgatctcctcgtcgagatcctttcattactttctgtgaaatctctccttcgattcagatgcgtaagtaagtcttgg 1687218  T
Q  240 aaaactctcatttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatc 303  Q
    ||  |||| ||||| ||||||  |||||| ||||| ||  |||||| || |||||||| |||||    
T  1687217 aacgctctaatttctgatcccttttttgtgaaattccatctcaagagatcaaaatcacaaaatc 1687154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 3573374 - 3573296
Alignment:
Q  349 agtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattga 427  Q
    |||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||| |||||| |||||| ||||||||    
T  3573374 agtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattga 3573296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 353 - 427
Target Start/End: Complemental strand, 1687024 - 1686950
Alignment:
Q  353 tcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattga 427  Q
    |||||||||| |||||| || || ||||||||||||  ||| |||||||||||||||||||||||| ||||||||    
T  1687024 tcattccatatcctatatcttgtttactcgataacctgtcgattacccttgttgctgatcctcactctctattga 1686950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 304
Target Start/End: Complemental strand, 3561915 - 3561795
Alignment:
Q  184 tttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttcaa 283  Q
    |||| ||||||||  ||||||||||| ||||||||||||||||||| ||   |||||| ||||||||||| |||||    || || ||||| ||| ||||    
T  3561915 tttcgttacttcccataaaatctctaattcgattcaaatgtgtaagtaaatattggaacactctcatttcggatccttccttcgtgaaattacacctcaa 3561816  T
Q  284 gaaattaaaatcacgaaatcc 304  Q
    ||||| || | ||||||||||    
T  3561815 gaaatcaacaacacgaaatcc 3561795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 598
Target Start/End: Complemental strand, 3573206 - 3573134
Alignment:
Q  526 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattggttgtttttgtgattctg 598  Q
    ||||||||| |||| || |||||||| |||||  ||||||||||||||||||| || | |||| |||||||||    
T  3573206 gagtactggctccgattctggaaccctgccacccggaaaatatctcaaaaaatggggtattttcgtgattctg 3573134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 581
Target Start/End: Complemental strand, 11849250 - 11849195
Alignment:
Q  526 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 581  Q
    ||||||||| |||||||||||||||||||||| |||| || ||||| |||| ||||    
T  11849250 gagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 11849195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 616 - 666
Target Start/End: Complemental strand, 3561446 - 3561396
Alignment:
Q  616 tttggttgtgataattccactggaacttttaaagtggttgcgtcacgttac 666  Q
    ||||||||||||||||| ||||| | || |||||||||||||||| |||||    
T  3561446 tttggttgtgataattcaactggcatttataaagtggttgcgtcatgttac 3561396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 562
Target Start/End: Complemental strand, 3561545 - 3561512
Alignment:
Q  529 tactggttccgtttatggaacccagccactagga 562  Q
    |||||| |||||||||||||||||||||||||||    
T  3561545 tactggctccgtttatggaacccagccactagga 3561512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 581
Target Start/End: Original strand, 29074553 - 29074608
Alignment:
Q  526 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 581  Q
    ||||||||| |||||||||||||||||||||| |||| || ||||| |||| ||||    
T  29074553 gagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 29074608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 581
Target Start/End: Original strand, 29106288 - 29106343
Alignment:
Q  526 gagtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 581  Q
    ||||||||| |||||||||||||||||||||| |||| || ||||| |||| ||||    
T  29106288 gagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 29106343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 571
Target Start/End: Original strand, 29858913 - 29858955
Alignment:
Q  529 tactggttccgtttatggaacccagccactaggaaaatatctc 571  Q
    ||||||||||||||||||||||||||||| |||| || |||||    
T  29858913 tactggttccgtttatggaacccagccacaaggacaacatctc 29858955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 527 - 581
Target Start/End: Original strand, 29880752 - 29880806
Alignment:
Q  527 agtactggttccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 581  Q
    ||||||| ||| |||||||||||||| |||||| |||||||||||| ||| ||||    
T  29880752 agtactgcttctgtttatggaacccatccactaagaaaatatctcataaatttgg 29880806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 570
Target Start/End: Complemental strand, 12820715 - 12820674
Alignment:
Q  529 tactggttccgtttatggaacccagccactaggaaaatatct 570  Q
    |||||||||| | | |||||||||||||||||||||||||||    
T  12820715 tactggttccatatctggaacccagccactaggaaaatatct 12820674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 581
Target Start/End: Original strand, 29898858 - 29898903
Alignment:
Q  536 tccgtttatggaacccagccactaggaaaatatctcaaaaaattgg 581  Q
    |||||||||||||||||||||| |||| || |||||||||| ||||    
T  29898858 tccgtttatggaacccagccaccaggacaacatctcaaaaatttgg 29898903  T

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