View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_high_43 (Length: 305)
Name: NF1048_high_43
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 70 - 293
Target Start/End: Original strand, 7422817 - 7423040
Alignment:
| Q |
70 |
attttcctaggtgtggtgagcccaaaaatctcctccatattcaaatcctcttttttcacattattaggtaatctccaattaaatccatgcaacaaattag |
169 |
Q |
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||||||||||| || || ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
7422817 |
attttcctaggagtagtcagcccaaaaatctcctccatattcaaatcctctttcttcatatcattaggtaatctccaattaaatccatgcaacaaattag |
7422916 |
T |
|
| Q |
170 |
ccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422917 |
ccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatc |
7423016 |
T |
|
| Q |
270 |
tatattattaccaataaacctctc |
293 |
Q |
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|||||||||||||||||||||||| |
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| T |
7423017 |
tatattattaccaataaacctctc |
7423040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 70 - 293
Target Start/End: Original strand, 7415158 - 7415381
Alignment:
| Q |
70 |
attttcctaggtgtggtgagcccaaaaatctcctccatattcaaatcctcttttttcacattattaggtaatctccaattaaatccatgcaacaaattag |
169 |
Q |
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|||||| ||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7415158 |
attttcttaggtgtagaaagcccaaaaatctcctccatattcaaatcctcctttttcacattattaggtaatgtccaattaaatccatgcaacaaattag |
7415257 |
T |
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| Q |
170 |
ccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatc |
269 |
Q |
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||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
7415258 |
ccaaacttgtttgaatcaccttaataccaagagggtaaccaggacacatccttctaccagcaccaaatggtaacaactcaaaatcatgtccttttacatc |
7415357 |
T |
|
| Q |
270 |
tatattattaccaataaacctctc |
293 |
Q |
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||||| ||||||| ||||||||| |
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| T |
7415358 |
tatatctttaccaagaaacctctc |
7415381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 70 - 265
Target Start/End: Original strand, 7429223 - 7429418
Alignment:
| Q |
70 |
attttcctaggtgtggtgagcccaaaaatctcctccatattcaaatcctcttttttcacattattaggtaatctccaattaaatccatgcaacaaattag |
169 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
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| T |
7429223 |
attttcttaggtgtagtgagcccaaaaatctcctccatatttaaatcctcttttttcatatcattaggtaatctccaattaaatccatgcaacaagttag |
7429322 |
T |
|
| Q |
170 |
ccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtcctttta |
265 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||| |
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| T |
7429323 |
ccaaacttgattgaaccaccttaagaccaagaggataaccaggacacatccttctaccagcacctaatggcaacatcttataatcatgtcctttta |
7429418 |
T |
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