View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_high_44 (Length: 292)
Name: NF1048_high_44
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_high_44 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 43574826 - 43574760
Alignment:
| Q |
226 |
aatttggattaccttaaattaatgtgtgcaggaatcaacaatcggagcggcatttttcacacaggtt |
292 |
Q |
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| T |
43574826 |
aatttgaattaccttaaatgaatgtgtgcaggaatcaacaatcggagccgcatttttcacacaggtt |
43574760 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 43574826 - 43574760
Alignment:
| Q |
120 |
aatttggattaccttaaattaatgtgtgcaggaatcaacaatcggagcggcatttttcacacaggtt |
186 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43574826 |
aatttgaattaccttaaatgaatgtgtgcaggaatcaacaatcggagccgcatttttcacacaggtt |
43574760 |
T |
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