View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_high_47 (Length: 277)
Name: NF1048_high_47
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 44924154 - 44924299
Alignment:
| Q |
1 |
ataattcaaaaccaaccttaatttgtgattaaaatgtcaggaggagtacaaatcacagactatatcatccaactaactagtataaagatcaagcagatca |
100 |
Q |
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| T |
44924154 |
ataattcaaaaccaaccttaatttgtgattaaaatgtcaggaggagtacaaatcacagactatatcatccaactaactagtataaagatcaagcagatca |
44924253 |
T |
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| Q |
101 |
ttaatgcaagtttcacaattataagttctcaaaaggcacaggaaag |
146 |
Q |
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| T |
44924254 |
ttaatgcaagtttcacagttataagttctcaaaaggcacaggaaag |
44924299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 29514984 - 29514867
Alignment:
| Q |
21 |
atttgtgattaaaatgtcaggaggagtacaaatcacagactatatcatccaactaactagtataaagatcaagcagatcattaatgcaagtttcacaatt |
120 |
Q |
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| T |
29514984 |
atttgtgtttaaaatgtcaagtggtgtacaaatcacaaactatatcattcaactaacttgtatgaacaataaaaaggtcttcaatacaagtttcagaatt |
29514885 |
T |
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| Q |
121 |
ataagttctcaaaaggca |
138 |
Q |
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| T |
29514884 |
acaagttctcaaaaggca |
29514867 |
T |
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