View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_high_52 (Length: 258)
Name: NF1048_high_52
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_high_52 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 179046 - 178825
Alignment:
| Q |
29 |
atatcatttatatatgctgcaagacctatattttttattcataaatttgtta-atatatagctcttataggtgaataaagcaaaaataaattctattaaa |
127 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
179046 |
atatcatttatatatgctggaagacctatattttttattcataaatttgttacatatatagctcttataggtgaataaagcaaaaataaattctattaaa |
178947 |
T |
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| Q |
128 |
aaagttaa-tagctgctataggtaaataagaagctgcagccgacctaagagcagtaggtcttagtgttaaagtgagaaaaagagtgtgttttctccaaat |
226 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
178946 |
aaagttaagtagctgctataggtaaataagaagctgtagccgacctaacagcagtaggtcttaatgttaaagtgagaaaaagagtgtgttttctccaaat |
178847 |
T |
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| Q |
227 |
cccattaacttgtcattctgtg |
248 |
Q |
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|||||||||||||||||||||| |
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| T |
178846 |
cccattaacttgtcattctgtg |
178825 |
T |
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