View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1048_low_21 (Length: 660)

Name: NF1048_low_21
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1048_low_21
NF1048_low_21
[»] chr7 (9 HSPs)
chr7 (34-560)||(18780099-18780629)
chr7 (547-651)||(18780646-18780749)
chr7 (106-176)||(18777362-18777432)
chr7 (131-247)||(4042745-4042861)
chr7 (106-171)||(18777444-18777508)
chr7 (196-253)||(21556663-21556720)
chr7 (179-246)||(18779130-18779197)
chr7 (196-253)||(22189530-22189587)
chr7 (201-253)||(26703333-26703385)
[»] chr3 (10 HSPs)
chr3 (82-354)||(1605387-1605662)
chr3 (411-560)||(1605662-1605813)
chr3 (547-650)||(1605829-1605932)
chr3 (461-560)||(1622832-1622934)
chr3 (547-650)||(1622951-1623054)
chr3 (608-651)||(1629186-1629229)
chr3 (491-528)||(24595188-24595225)
chr3 (491-528)||(51308770-51308807)
chr3 (194-246)||(3650791-3650843)
chr3 (105-177)||(29233190-29233262)
[»] chr8 (3 HSPs)
chr8 (105-253)||(10150181-10150329)
chr8 (108-178)||(33831878-33831948)
chr8 (491-528)||(4678054-4678091)
[»] chr5 (3 HSPs)
chr5 (105-171)||(34980525-34980591)
chr5 (120-192)||(34980414-34980486)
chr5 (193-253)||(34980221-34980281)
[»] chr1 (3 HSPs)
chr1 (109-167)||(39252684-39252741)
chr1 (191-253)||(17645771-17645833)
chr1 (491-528)||(20225645-20225682)
[»] chr2 (1 HSPs)
chr2 (121-178)||(28781195-28781252)
[»] chr4 (1 HSPs)
chr4 (491-528)||(55849574-55849611)


Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 34 - 560
Target Start/End: Original strand, 18780099 - 18780629
Alignment:
Q  34 caaagagatagaacctatatataggaatttctatgtttgtcttgcaatttaagaaaaaacctcgtggcatgcaagacttgccaaacaagaaactaaccaa 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  18780099 caaagagatagaacctatatataggaatttctatgtttgtcttgcaatttaagaaaaaaccttgtggcatgcaagacttgccaagcaagaaactaaccaa 18780198  T
Q  134 gtgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttacttatcttgcactacctcttcctttacaattctaagcattttgggactttt-tc 232  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18780199 gtgatggaaccaccatgcttgtgttgaacttcaagaaataaccttacttgtcttgcactacctcttcctttacaattctaagcattttgggacttttttc 18780298  T
Q  233 aacatgtatatttttaaccaagacacctgttaagattttgaggatttggagaaattgaataacaagagcattaaaaggttgaatgagaataatactcgta 332  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18780299 aacatgtatattttcaaccaagacacatgttaagattttgaggatttggagaaattgaataacaagagcattaaaaggttgaatgagaataatactcgta 18780398  T
Q  333 gagaatcattttgataaaaggtcgtaaaattaatacaagtgatgctcttatatagagctagaaaggggattaacaaactaacttcctaatgataaactct 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18780399 gagaatcattttgataaaaggtcgtaaaattaatacaagtgatgctcttatatagagctagaaaggggattaacaaactaacttcctaataataaactct 18780498  T
Q  433 aactaattttgtatttcacacttacccaataattgaactaattacttacactactaactatcatttttcttaatagcttccctcaaactcaaggt---at 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  18780499 aactaattttgtatttcacacttacccaataattgaactaattacttacactactaactatcatttttcttaatagcttccctcaaactcaaggtatgat 18780598  T
Q  530 tgtacaacgataatgtttatatgaatatgaa 560  Q
    |||||||||||||||||||||||||||||||    
T  18780599 tgtacaacgataatgtttatatgaatatgaa 18780629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 547 - 651
Target Start/End: Original strand, 18780646 - 18780749
Alignment:
Q  547 tatatgaatatgaaaaagaatatctgtcgcaatgtacaaaagaatatgggtatgctcttacaagaattacaatgaatttaattacaaagaattaagtaga 646  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18780646 tatatgaatatgaaaa-gaatatctctcgcaatgtacaaaagaatatgggtatgctcttacaagaattacaatgaatttaattacaaagaattaagtaca 18780744  T
Q  647 ataat 651  Q
    |||||    
T  18780745 ataat 18780749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 18777362 - 18777432
Alignment:
Q  106 aagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataacc 176  Q
    |||||||||||||||||||| |||  || |||||||||||   ||||||||||||||||||||||| ||||    
T  18777362 aagacttgccaaacaagaaagtaaagaattgaaggaaccatattgcttgtcttgaacttcaagaaacaacc 18777432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 4042861 - 4042745
Alignment:
Q  131 caagtgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttacttatcttgcactacctcttcctttacaattctaagcattttgggactttt 230  Q
    ||||||||||||| | | || || ||||  ||||||||||| || |||  |||| ||| |||||||||||||||| ||||||||||| | ||  | ||||    
T  4042861 caagtgaaggaactatcttgtttatcttacacttcaagaaacaatcttcattattttgtactacctcttcctttataattctaagcaatgtgatattttt 4042762  T
Q  231 tcaacatgtatattttt 247  Q
    || ||||||||||||||    
T  4042761 tcgacatgtatattttt 4042745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 18777444 - 18777508
Alignment:
Q  106 aagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaa 171  Q
    |||||||| |||| |||||| ||| ||||||||||||||||||| ||||||| | |||||||||||    
T  18777444 aagacttgtcaaataagaaagtaaacaagtgaaggaaccaccat-cttgtctcgcacttcaagaaa 18777508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 21556720 - 21556663
Alignment:
Q  196 tcttcctttacaattctaagcattttgggactttttcaacatgtatatttttaaccaa 253  Q
    |||||||||||||||||||||| | || ||||||||||||||||| ||| | ||||||    
T  21556720 tcttcctttacaattctaagcaatgtgagactttttcaacatgtacattatcaaccaa 21556663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 18779130 - 18779197
Alignment:
Q  179 acttatcttgcactacctcttcctttacaattctaagcattttgggactttttcaacatgtatatttt 246  Q
    |||| |||||||||||||||| ||||| ||||||||||| | ||  |||  |||||||||||||||||    
T  18779130 acttgtcttgcactacctcttactttataattctaagcaatgtgacactccttcaacatgtatatttt 18779197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 22189530 - 22189587
Alignment:
Q  196 tcttcctttacaattctaagcattttgggactttttcaacatgtatatttttaaccaa 253  Q
    |||||||||||||| ||||||| | || ||||| ||||| ||||||||||| ||||||    
T  22189530 tcttcctttacaatactaagcaatgtgtgacttcttcaatatgtatattttcaaccaa 22189587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 26703333 - 26703385
Alignment:
Q  201 ctttacaattctaagcattttgggactttttcaacatgtatatttttaaccaa 253  Q
    |||||||||| |||||| | || ||||| ||||||||||||||||| ||||||    
T  26703333 ctttacaattataagcaatgtgagacttcttcaacatgtatattttcaaccaa 26703385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 1e-92; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 82 - 354
Target Start/End: Original strand, 1605387 - 1605662
Alignment:
Q  82 ttaagaaaaaacctcgtggcatgcaagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttact 181  Q
    |||||||||||||||||||||||||||| || | || ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |    
T  1605387 ttaagaaaaaacctcgtggcatgcaagattttctaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgcacttcaagaaacaaccttaat 1605486  T
Q  182 tatcttgcac--tacctcttcctttacaattctaagcattttgggactttttcaacatgtatatttttaaccaagacacc-tgttaagattttgaggatt 278  Q
    | ||||||||  |||||||||||||||||||||||||||  |||||||| ||||||||||||||||| |||||| ||||| |||||| ||||||||||||    
T  1605487 tgtcttgcacactacctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacacaccatgttaaaattttgaggatt 1605586  T
Q  279 tggagaaattgaataacaagagcattaaaaggttgaatgagaataatactcgtagagaatcattttgataaaaggt 354  Q
    |||||||||||||| | |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  1605587 tggagaaattgaatgaaaagagctttaaaaggttgaatgagaataatacacgaagagaatcattttgataaaaggt 1605662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 411 - 560
Target Start/End: Original strand, 1605662 - 1605813
Alignment:
Q  411 taacttcctaatgataaactctaactaattttgtatttcacacttacccaataattgaactaattacttacactactaactatcatttttcttaatagct 510  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1605662 taacttcctaataataaactctaactaattttgtatttcacacttaccaaataattgaactaattacttacactactaactatcattattcttaatagct 1605761  T
Q  511 tccctcaaactcaaggtat--tgtacaacgataatgtttatatgaatatgaa 560  Q
    ||||| ||||||||| |||  | |||||||||||||||||||||||||||||    
T  1605762 tcccttaaactcaagatatgatttacaacgataatgtttatatgaatatgaa 1605813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 547 - 650
Target Start/End: Original strand, 1605829 - 1605932
Alignment:
Q  547 tatatgaatatgaaaaagaatatctgtcgcaatgtacaaaagaatatgggtatgctcttacaagaattacaatgaatttaattacaaagaattaagtaga 646  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  1605829 tatatgaatatgaaaaagaatatctctcgcagtgtacaaaagaatatgagcatgctcttacaagaattacaatgaacttaattacaaagaattaagtaca 1605928  T
Q  647 ataa 650  Q
    ||||    
T  1605929 ataa 1605932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 461 - 560
Target Start/End: Original strand, 1622832 - 1622934
Alignment:
Q  461 ataattgaactaattacttacactactaactatcatttttcttaatagcttccctcaaactcaaggt---attgtacaacgataatgtttatatgaatat 557  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||||| | ||||||||||| ||   ||||||||||||||||||||||||||||||    
T  1622832 ataattgaactaattacttacaccgctaactatcattattcttaatagctcctctcaaactcaatgtatgattgtacaacgataatgtttatatgaatat 1622931  T
Q  558 gaa 560  Q
    |||    
T  1622932 gaa 1622934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 547 - 650
Target Start/End: Original strand, 1622951 - 1623054
Alignment:
Q  547 tatatgaatatgaaaaagaatatctgtcgcaatgtacaaaagaatatgggtatgctcttacaagaattacaatgaatttaattacaaagaattaagtaga 646  Q
    ||||||| ||||||||| ||||||| ||  | |||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||||| |    
T  1622951 tatatgactatgaaaaataatatctctcaaagtgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtaca 1623050  T
Q  647 ataa 650  Q
    ||||    
T  1623051 ataa 1623054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 651
Target Start/End: Original strand, 1629186 - 1629229
Alignment:
Q  608 aagaattacaatgaatttaattacaaagaattaagtagaataat 651  Q
    ||||||||||||||||||||||||||| || || ||||||||||    
T  1629186 aagaattacaatgaatttaattacaaataactatgtagaataat 1629229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 24595225 - 24595188
Alignment:
Q  491 tatcatttttcttaatagcttccctcaaactcaaggta 528  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  24595225 tatcattattcttaatagcctccctcaaactcaaggta 24595188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 51308807 - 51308770
Alignment:
Q  491 tatcatttttcttaatagcttccctcaaactcaaggta 528  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  51308807 tatcattattcttaatagcctccctcaaactcaaggta 51308770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 3650843 - 3650791
Alignment:
Q  194 cctcttcctttacaattctaagcattttgggactttttcaacatgtatatttt 246  Q
    ||||||||||||||||| |||| | | || ||| |||||||||||||||||||    
T  3650843 cctcttcctttacaattataagtaatgtgagacattttcaacatgtatatttt 3650791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 29233190 - 29233262
Alignment:
Q  105 caagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataacct 177  Q
    |||||||||||| |||  ||| |||  |||||| ||||||||| || |||||||| ||||||||||| |||||    
T  29233190 caagacttgccagacagaaaagtaaataagtgatggaaccaccttggttgtcttgcacttcaagaaacaacct 29233262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 105 - 253
Target Start/End: Complemental strand, 10150329 - 10150181
Alignment:
Q  105 caagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttacttatcttgcactacctcttccttt 204  Q
    ||||||||||||||||| ||| ||| ||| |||| |||||    ||||||||||| ||||||||| | ||| || ||| ||||||| ||||| |||| ||    
T  10150329 caagacttgccaaacaaaaaagtaaacaaatgaatgaaccgttttgcttgtcttgcacttcaagatacaacattgcttgtcttgcattaccttttccatt 10150230  T
Q  205 acaattctaagcattttgggactttttcaacatgtatatttttaaccaa 253  Q
    |||||| |||| | | || ||||| ||||||||||||||||| ||||||    
T  10150229 acaattttaagtaatgtgagacttcttcaacatgtatattttcaaccaa 10150181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 33831948 - 33831878
Alignment:
Q  108 gacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataacctt 178  Q
    ||||| |||| ||||||| ||| ||||||||| ||| ||| ||||||| ||| ||||||||||||||||||    
T  33831948 gacttcccaatcaagaaagtaaacaagtgaagcaacaaccttgcttgtgttgcacttcaagaaataacctt 33831878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 528
Target Start/End: Complemental strand, 4678091 - 4678054
Alignment:
Q  491 tatcatttttcttaatagcttccctcaaactcaaggta 528  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  4678091 tatcattattcttaatagcctccctcaaactcaaggta 4678054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 34980591 - 34980525
Alignment:
Q  105 caagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaa 171  Q
    ||||||||||||| ||||||| ||| |||||||||||| |||| ||||||||||| |||||||||||    
T  34980591 caagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttgcttgtcttggacttcaagaaa 34980525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 34980414 - 34980486
Alignment:
Q  120 aagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataaccttacttatcttgcact 192  Q
    |||||| ||| ||| |||||||| |||| |||||| |||| ||||||||||| |||||| ||| |||||||||    
T  34980414 aagaaagtaaacaactgaaggaatcaccttgcttgccttgcacttcaagaaacaaccttgcttgtcttgcact 34980486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 34980281 - 34980221
Alignment:
Q  193 acctcttcctttacaattctaagcattttgggactttttcaacatgtatatttttaaccaa 253  Q
    ||||||||||||| ||||||||||| | |  ||||| || |||||||||||||| ||||||    
T  34980281 acctcttcctttataattctaagcaatgtaagacttctttaacatgtatattttcaaccaa 34980221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 39252684 - 39252741
Alignment:
Q  109 acttgccaaacaagaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaa 167  Q
    ||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  39252684 acttgtcaaacaagaaagtaaacaagtgaaggaaccacc-tgcttgtcttgaacttcaa 39252741  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 17645771 - 17645833
Alignment:
Q  191 ctacctcttcctttacaattctaagcattttgggactttttcaacatgtatatttttaaccaa 253  Q
    ||||| ||||||||||||||||||||| | || ||||| ||||||||| |||| || ||||||    
T  17645771 ctaccccttcctttacaattctaagcaatgtgagacttcttcaacatgcatatattcaaccaa 17645833  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 528
Target Start/End: Original strand, 20225645 - 20225682
Alignment:
Q  491 tatcatttttcttaatagcttccctcaaactcaaggta 528  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  20225645 tatcattattcttaatagcctccctcaaactcaaggta 20225682  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 28781195 - 28781252
Alignment:
Q  121 agaaactaaccaagtgaaggaaccaccatgcttgtcttgaacttcaagaaataacctt 178  Q
    ||||| ||| ||||||||||||||||| || |||||||| ||||||||||||| ||||    
T  28781195 agaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaatatcctt 28781252  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 528
Target Start/End: Original strand, 55849574 - 55849611
Alignment:
Q  491 tatcatttttcttaatagcttccctcaaactcaaggta 528  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  55849574 tatcattattcttaatagcctccctcaaactcaaggta 55849611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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