View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1048_low_22 (Length: 659)

Name: NF1048_low_22
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1048_low_22
NF1048_low_22
[»] chr6 (7 HSPs)
chr6 (420-591)||(29364027-29364198)
chr6 (282-386)||(29362767-29362871)
chr6 (292-346)||(24270233-24270287)
chr6 (386-427)||(29362910-29362951)
chr6 (296-339)||(29351712-29351755)
chr6 (425-520)||(29353713-29353809)
chr6 (343-375)||(29915444-29915476)
[»] chr5 (2 HSPs)
chr5 (290-375)||(27753866-27753946)
chr5 (398-463)||(27754121-27754192)
[»] chr7 (1 HSPs)
chr7 (427-492)||(29358638-29358703)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 3e-87; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 420 - 591
Target Start/End: Original strand, 29364027 - 29364198
Alignment:
Q  420 atcatcaaaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattgcttggtaattttctcttcaacacacat 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29364027 atcatcaaaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattgcttggtaattttctcatcaacacacat 29364126  T
Q  520 acaccctttactatcaacccagaaattcaaatcaaacattctctctcattttgacaaaaactcaaacttcat 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29364127 acaccctttactatcaacccagaaattcaaatcaaacattctctctcattttgacaaaaactcaaacctcat 29364198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 29362767 - 29362871
Alignment:
Q  282 gttttctatatacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatgttgcaggcacatgaacatagagttattgtccatta 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  29362767 gttttctatatacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatgttctaggcacatgaacatagagttattgtccatta 29362866  T
Q  382 accac 386  Q
    |||||    
T  29362867 accac 29362871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 24270233 - 24270287
Alignment:
Q  292 tacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatg 346  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24270233 tacacaaatgtgctgcaaatatatagaaaagcatagtattctatacataaatatg 24270287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 29362910 - 29362951
Alignment:
Q  386 caactcatagaactaagagattcgttattactgaatcatcaa 427  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  29362910 caactcatagaacttagagattcgttattactgaatcatcaa 29362951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 29351712 - 29351755
Alignment:
Q  296 caaatgtgctgcaaatatacagaaaagcatagtattctatacat 339  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||    
T  29351712 caaatgtgctgcaaatatatagaaaaacatagtattctttacat 29351755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 520
Target Start/End: Original strand, 29353713 - 29353809
Alignment:
Q  425 caaaacaaaaagaattcaactttttctctcttatttcc--gaaaaaatcaactttctttctcaacaattgcttggtaattttctcttcaacacacata 520  Q
    |||||| |||||||||| |||||||||||| | |||||   |||||||| |||||||| |||||||| | || ||||||| | || ||||||||||||    
T  29353713 caaaacgaaaagaattcgactttttctctcct-tttccaaaaaaaaatcgactttcttcctcaacaactactaggtaattatatcatcaacacacata 29353809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 29915476 - 29915444
Alignment:
Q  343 tatgttgcaggcacatgaacatagagttattgt 375  Q
    |||||| ||||||||||||||||||||||||||    
T  29915476 tatgttacaggcacatgaacatagagttattgt 29915444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 290 - 375
Target Start/End: Original strand, 27753866 - 27753946
Alignment:
Q  290 tatacacaaatgtgctgcaaatatacagaaaagcatagtattctatacataaatatgttgcaggcacatgaacatagagttattgt 375  Q
    ||||||||||| ||||||||||||| ||||     ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27753866 tatacacaaatatgctgcaaatataaagaa-----tagtattctatacataaatatgttgtaggcacatgaacatagagttattgt 27753946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 398 - 463
Target Start/End: Original strand, 27754121 - 27754192
Alignment:
Q  398 ctaagagattcgttattactgaatcatc------aaaacaaaaagaattcaactttttctctcttatttccg 463  Q
    ||||||||||| |||||| |||||||||      ||||||||||||||||||||||||||||||||||||||    
T  27754121 ctaagagattcattattattgaatcatcgaaacaaaaacaaaaagaattcaactttttctctcttatttccg 27754192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 492
Target Start/End: Complemental strand, 29358703 - 29358638
Alignment:
Q  427 aaacaaaaagaattcaactttttctctcttatttccgaaaaaatcaactttctttctcaacaattg 492  Q
    ||||||||||||||||||||| |||||| | ||||| ||||| | |||||||| ||||||||||||    
T  29358703 aaacaaaaagaattcaactttctctctcctttttccaaaaaactaaactttctctctcaacaattg 29358638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University