View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_low_23 (Length: 566)
Name: NF1048_low_23
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 50 - 544
Target Start/End: Complemental strand, 3253883 - 3253387
Alignment:
| Q |
50 |
catgaactacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctc--gagtcttgacccaatgaatcgcagcaagtagcatgttcgct |
147 |
Q |
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| T |
3253883 |
catgaactacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctcttgagtcttgacccaatgaatcgcagcaagtagcatgttcgct |
3253784 |
T |
|
| Q |
148 |
ttgcctatgggaacagaaaaaataggttctagccacatcgttttagctcaaacaaaaaaccctatttcatctcttatacgttacactattaaagcttgta |
247 |
Q |
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| T |
3253783 |
ttgcctatgggaacagaaaaaaaaggttctagccacatcgttttagctcaaacaaaaaaccctatttcatctcttatacgttacactattaaagcttgta |
3253684 |
T |
|
| Q |
248 |
taaaagcgaaacatatacattacacttcataaaatctcgcggaggacgcaactacttcattttaggatttaccatacgcatcgatcccaagatatgtttg |
347 |
Q |
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| T |
3253683 |
taaaagcgaaacatatacattacacttcataaaatctcgcggaggacgcaactactttattttaggatttaccatacgcatcgatcccaagatatgtttg |
3253584 |
T |
|
| Q |
348 |
tgattccattttaccccaatactcggtttcgttcatacagtgattcaaccttcattcaggtttgattaggtttcaactgatttgtgattaaggttatatt |
447 |
Q |
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| T |
3253583 |
tgattccattttaccccaatactcggtttcgttcatacagtgattcaaccttcattcaggtttgattaggtttcaactgatttgtgattaaggttctatt |
3253484 |
T |
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| Q |
448 |
atgcatcaattgattcatgattaagttttattgcaataaagattcaaattgatggaatataatggagagatgtgttgtgtggttctgtttgatgatg |
544 |
Q |
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| T |
3253483 |
atgcatcaattgattcatgattaagttttattgcaataaagattcaaattgatggaatataatggagagatgtgttgtgtggttctgtttgatgatg |
3253387 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 226
Target Start/End: Complemental strand, 27757055 - 27756893
Alignment:
| Q |
56 |
ctacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctcgagtcttgacccaatgaatcgcagcaagtagcatgttcgctttgcctat |
155 |
Q |
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||||||| ||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||| ||| || |||| ||| ||| | |||| |
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| T |
27757055 |
ctacaattttggagtgtgtagagaaaattatattatcaaatccaagctctc------tgacccaatgaattgcaacaggtagtgctttcacttcggctat |
27756962 |
T |
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| Q |
156 |
gggaacagaaaaaataggttctagccacatcgttttagctcaaacaaaaaaccctatttcatctcttatac |
226 |
Q |
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| T |
27756961 |
gtgaac-gaaaaaa-aggttttaaccacatcgttttatctccaacaaaagcccctatttattctcttatac |
27756893 |
T |
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