View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_low_27 (Length: 497)
Name: NF1048_low_27
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 44924123 - 44923660
Alignment:
| Q |
1 |
aaaaacaactgtttgtgtattgtttattctagtatcctgggactgttggtagaaactcaaatccggctcaagttccttccttaatataaaaatattagtt |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44924123 |
aaaaacaactgtttgtgtgttgtttattctagtatcctgggactgttggtagaaactcaaatccggcacaagttccttccttaatataaaaatattagtt |
44924024 |
T |
|
| Q |
101 |
caatcaaatctgtggtgtatgtttgtttatcctggaaatgctcatgttcatgtgccacaaaacacaagtccatctgtttgtttaccacaactccctaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44924023 |
caatcaaatctgtggtgtatgtttgtttatcctggaaatgctcatgttcatgtgccacaaaacacaagtccatctgtttgtttaccacaactccctcagg |
44923924 |
T |
|
| Q |
201 |
tgtctgttagaaaggacataagtttcattttcttgctggtagttgcaacatagaaaatcacatcttttaatccaccttctttgttcaaagaaagggaata |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44923923 |
tgtctgttaga--------------gattttcttgctggtagttgcaacatagaaaat--------------caccttctttgttcaaagaaagggaatt |
44923852 |
T |
|
| Q |
301 |
tccctctggatccttacctaagtagcacgcataccttgatcaaggtggttacgctactctccttgttcatcaaactgatgaatgcgtccttgaaattgtt |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44923851 |
accctctggatccttacctaagtagcacgcataccttgatcaaggtggttacgctactctccttgttcatcaaactgatgaatgcgtccttgaaattgtt |
44923752 |
T |
|
| Q |
401 |
gcacttttgtgtgcgtccaatctgtcaaggttcaaggttggttgtcaccccatgataacacccataagtactggctttgaatctctgctcctc |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| |
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| T |
44923751 |
gcacttttgtgtgcgtccaatctgtcaaggttcaaggttggttgtcaccccatgataacaccc-taagtactggcttcgaatctcagctcctc |
44923660 |
T |
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