View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_low_34 (Length: 429)
Name: NF1048_low_34
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_low_34 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 7422963 - 7423364
Alignment:
| Q |
14 |
catccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatctatattattaccaataaacctctctggtataaactcatatggattg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7422963 |
catccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatctatattattaccaataaacctctcaggtataaactcatatggattg |
7423062 |
T |
|
| Q |
114 |
tcccaaacattaggatctcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423063 |
tcccaaacattaggatctcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagctt |
7423162 |
T |
|
| Q |
214 |
ctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaaccca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423163 |
ctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaaccca |
7423262 |
T |
|
| Q |
314 |
tctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagattgcccattcaactgtaactgta |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
7423263 |
tctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagattgcccattctactgttactgta |
7423362 |
T |
|
| Q |
414 |
ga |
415 |
Q |
| |
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|| |
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|
| T |
7423363 |
ga |
7423364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 400
Target Start/End: Original strand, 7429369 - 7429758
Alignment:
| Q |
14 |
catccttctaccagtaccaaatggcaacaactcataatcatgtccttttac---atctatattattaccaataaacctctctggtataaactcatatgga |
110 |
Q |
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|||||||||||||| ||| |||||||||| || ||||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||| |
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| T |
7429369 |
catccttctaccagcacctaatggcaacatcttataatcatgtccttttattatatctatatcattgttaataaacctctctggtataaattcatatgga |
7429468 |
T |
|
| Q |
111 |
ttgtcccaaacattaggatctcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactag |
210 |
Q |
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|| |||||| || || ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |||| ||| |
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| T |
7429469 |
ttatcccaactatcagaatctcttccaattgtccaagtattgacaagaatcatagtcccttttggtatatcataaccatcaacattgcaattctcagtag |
7429568 |
T |
|
| Q |
211 |
cttctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaac |
310 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7429569 |
cttctcttggcactaacattggtgtcacaggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaac |
7429668 |
T |
|
| Q |
311 |
ccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagattgcccattc |
400 |
Q |
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|||||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||||||||| |
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| T |
7429669 |
ccatctatctctccctattactctatctagttcctctgtagctctcttgataatctctggccttttcacaagctcagaaattgcccattc |
7429758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 411
Target Start/End: Original strand, 7415304 - 7415701
Alignment:
| Q |
14 |
catccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatctatattattaccaataaacctctctggtataaactcatatggattg |
113 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||| || ||||| ||||||||||| |
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| T |
7415304 |
catccttctaccagcaccaaatggtaacaactcaaaatcatgtccttttacatctatatctttaccaagaaacctctcaggcataaattcatatggattc |
7415403 |
T |
|
| Q |
114 |
tcccaaacattaggatctcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagctt |
213 |
Q |
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|||||||| | || ||||||| |||||||||||||||||||||||| || ||||||||| || ||||| ||||||||||| ||||||||||| ||||||| |
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| T |
7415404 |
tcccaaacctcagaatctcttgcaattgtccaagtattgacaagaactatagtccctttgggaatatcgtaaccatcaactttgcaatcctctctagctt |
7415503 |
T |
|
| Q |
214 |
ctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaaccca |
313 |
Q |
| |
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||| ||||||||| |||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
7415504 |
ctcgtggcactaaaaatggtgccacgggatgtagcctcattgtttctttagcaattgcgtaaacataaggtaaattcgcaatgtctttctcttcaaccca |
7415603 |
T |
|
| Q |
314 |
tctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagattgcccattcaactgtaactg |
411 |
Q |
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||||||| ||||||| ||| | ||||| ||||| || ||| |||||| |||||||| ||| | || |||||||||||||||||||| ||||| |||| |
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| T |
7415604 |
tctatcttttcctatcactctatctagctcctcggttgctttcttgaagatctctggttttctaaccagctcggagattgcccattctactgttactg |
7415701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 19836 - 19799
Alignment:
| Q |
81 |
ataaacctctctggtataaactcatatggattgtccca |
118 |
Q |
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||||||||||||||| |||||||||||||||| ||||| |
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| T |
19836 |
ataaacctctctggtttaaactcatatggattctccca |
19799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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