View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1048_low_49 (Length: 307)

Name: NF1048_low_49
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1048_low_49
NF1048_low_49
[»] chr1 (9 HSPs)
chr1 (5-281)||(17114587-17114868)
chr1 (12-139)||(13061982-13062109)
chr1 (5-131)||(49491908-49492033)
chr1 (5-132)||(50903509-50903636)
chr1 (5-130)||(19394156-19394281)
chr1 (43-190)||(3374307-3374455)
chr1 (5-132)||(41035052-41035179)
chr1 (64-130)||(39332359-39332425)
chr1 (52-131)||(14344068-14344147)
[»] chr6 (4 HSPs)
chr6 (6-165)||(25167810-25167970)
chr6 (24-130)||(4263398-4263501)
chr6 (19-132)||(10990004-10990117)
chr6 (29-139)||(3949324-3949434)
[»] chr2 (7 HSPs)
chr2 (6-131)||(31092283-31092408)
chr2 (5-175)||(14296241-14296412)
chr2 (6-139)||(37344586-37344719)
chr2 (5-132)||(18811732-18811859)
chr2 (43-132)||(8413844-8413933)
chr2 (12-132)||(13502655-13502775)
chr2 (22-131)||(18693087-18693193)
[»] chr4 (5 HSPs)
chr4 (6-132)||(37049967-37050094)
chr4 (5-132)||(24239870-24239994)
chr4 (12-131)||(19852457-19852576)
chr4 (12-131)||(16593797-16593916)
chr4 (24-132)||(16832167-16832275)
[»] chr3 (7 HSPs)
chr3 (6-124)||(35526596-35526718)
chr3 (5-132)||(51524833-51524960)
chr3 (5-140)||(16893043-16893178)
chr3 (14-179)||(26796799-26796965)
chr3 (12-129)||(31067148-31067266)
chr3 (12-139)||(29346765-29346898)
chr3 (95-131)||(39539071-39539107)
[»] chr8 (7 HSPs)
chr8 (6-165)||(29369070-29369230)
chr8 (12-131)||(8831250-8831369)
chr8 (5-132)||(27786814-27786941)
chr8 (12-131)||(36206448-36206567)
chr8 (12-211)||(28225659-28225860)
chr8 (5-101)||(399778-399874)
chr8 (60-128)||(30646385-30646453)
[»] scaffold0531 (1 HSPs)
scaffold0531 (12-199)||(10232-10420)
[»] chr5 (7 HSPs)
chr5 (6-139)||(19215349-19215482)
chr5 (6-165)||(788268-788428)
chr5 (5-132)||(36868258-36868385)
chr5 (5-116)||(15188032-15188140)
chr5 (13-69)||(37307257-37307313)
chr5 (71-165)||(32278699-32278794)
chr5 (86-132)||(36150672-36150718)
[»] chr7 (3 HSPs)
chr7 (44-132)||(19407870-19407958)
chr7 (23-130)||(26449565-26449672)
chr7 (25-130)||(33191264-33191369)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 17114868 - 17114587
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17114868 cactatgcaagtctatctgagagcactaagacagagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccagaatgagga 17114769  T
Q  105 cccatgcccaaaagggtacctccaaagcggccttgcagctatagaattgttggttcaattgtgatagaatagctagcaatttcaatattttgtacaaatt 204  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  17114768 cccatgtccaaaagggtacctccaaagcggccttgcagctatagaatagttggttcaattgcgatagaatacctagcaatttcaatattttgtacaaatt 17114669  T
Q  205 ttcat--agtgtagtttt---gcagttattatggccaagaatggccataatctacctagctttattttacgatggacttagc 281  Q
    |||||  |||||||||||   || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  17114668 ttcatagagtgtagttttgtagcggttattatggccaagaatggtcataatctgcctagctttattttacgatggacttagc 17114587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 13062109 - 13061982
Alignment:
Q  12 caagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgc 111  Q
    |||||||||||||||||||||||||| ||| |||||||||||| || ||||||||||||| ||||  |||||||||||| |||| ||||||||||| |||    
T  13062109 caagtctatctgagagcactaagacagagaaaaagaagaagaagcaggtgaacaaagtgatgccttttagctttaactcagccgaaatgaggacccgtgc 13062010  T
Q  112 ccaaaagggtacctccaaagcggccttg 139  Q
      ||||| ||||||||||||| ||||||    
T  13062009 tgaaaagagtacctccaaagccgccttg 13061982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 49492033 - 49491908
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| ||||||| |  |||||||||||| ||  ||||||| ||||||| |||||||||||||||| |||| ||||||| ||||| |||||||||||||    
T  49492033 cactatccaagtctgttagagagcactaaggcagggagaaagcagaagaagcatgtgaacaaagtga-gcctactagcttcaactcagccggaatgagga 49491935  T
Q  105 cccatgcccaaaagggtacctccaaag 131  Q
    ||| |||||||||||||||||||||||    
T  49491934 cccgtgcccaaaagggtacctccaaag 49491908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 50903636 - 50903509
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| ||||||| || |||||||||||| || || ||||| ||||||| || |||||||||||||||||| ||||||| ||||| |||| ||||||||    
T  50903636 cactatccaagtctgtcagagagcactaaggcagagtgaaagcagaagaagcaggtgaacaaagtgaagcctactagcttcaactcagccgaaatgagga 50903537  T
Q  105 cccatgcccaaaagggtacctccaaagc 132  Q
    ||| ||||||||  ||||||||||||||    
T  50903536 cccgtgcccaaagcggtacctccaaagc 50903509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 19394281 - 19394156
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| |||| ||||| |||||||||||  || ||| |||||||||||| ||||||| ||||||||||||| || |||||||||  || ||||||||||    
T  19394281 cactatccaagcctatcggagagcactaaagcagagaaaaagaagaagaagcatgtgagcaaagtgaagccttcttgctttaacttagctggaatgagga 19394182  T
Q  105 cccatgcccaaaagggtacctccaaa 130  Q
    ||| ||||||||||||||||| ||||    
T  19394181 cccgtgcccaaaagggtaccttcaaa 19394156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 190
Target Start/End: Original strand, 3374307 - 3374455
Alignment:
Q  43 aaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggtacctccaaagcggcctt-gca 141  Q
    |||||||||||| || ||||||||||||||||| ||||| |||||||| ||||||||||||||   |||||||||||||| ||||||||| ||||| | |    
T  3374307 aaagaagaagaagcaagtgaacaaagtgaagccggctagatttaactcagccggaatgaggacatgtgcccaaaagggtagctccaaagctgccttggaa 3374406  T
Q  142 gctatagaattgttggttcaattgtgatagaatagctagcaatttcaat 190  Q
    |||| ||||| ||||||| |||||   |||| ||||||| ||| |||||    
T  3374407 gctacagaatagttggtttaattgcattagattagctagtaatatcaat 3374455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 41035179 - 41035052
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| |||||||||||||||||| |||| || ||| |||||||||||| || ||||| |   |||||||| ||||||||||||| |||||||||||||    
T  41035179 cactatccaagtctatctgagagcaataaggcagagaaaaagaagaagaagcaggtgaatattttgaagccttctagctttaactcagccggaatgagga 41035080  T
Q  105 cccatgcccaaaagggtacctccaaagc 132  Q
    ||| ||||||||| ||  ||||||||||    
T  41035079 cccgtgcccaaaaaggctcctccaaagc 41035052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 39332359 - 39332425
Alignment:
Q  64 caaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggtacctccaaa 130  Q
    |||||||||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||| ||||    
T  39332359 caaagtgaagcctgcttgctttaactcagccgaaatgaggacccgtgcccaaaagggtaccttcaaa 39332425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 14344068 - 14344147
Alignment:
Q  52 gaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggtacctccaaag 131  Q
    |||||| |||||||||||||||||| |||| ||||||||   |||||||| ||| | || ||||||||||||||||||||    
T  14344068 gaaacaggtgaacaaagtgaagccttctagttttaactcaatcggaatgatgactcgtgtccaaaagggtacctccaaag 14344147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 25167810 - 25167970
Alignment:
Q  6 actatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggac 105  Q
    ||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||    
T  25167810 actatccaagtctatctgaaagcactaaggcagagagaaagaagaagaaacatgtgaacaaagtgaagccttctagttttaactcagccggaaagaggac 25167909  T
Q  106 ccatgcccaaaagggtacctccaaagcggccttg-cagctatagaattgttggttcaattg 165  Q
     |||||||||||||||||||||||||| |||||| ||| || ||||| |||||||||||||    
T  25167910 tcatgcccaaaagggtacctccaaagccgccttgacagatacagaatagttggttcaattg 25167970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 4263501 - 4263398
Alignment:
Q  24 agagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggtac 123  Q
    ||||||||||| || ||| ||||||||||   ||||| |||||| ||||||||||||| |||||||| |||||||||||||||| ||| ||||||||| |    
T  4263501 agagcactaaggcagagaaaaagaagaag---catgtaaacaaaatgaagcctgctagttttaactcagccggaatgaggacccgtgctcaaaagggttc 4263405  T
Q  124 ctccaaa 130  Q
    |||||||    
T  4263404 ctccaaa 4263398  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 10990004 - 10990117
Alignment:
Q  19 atctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaag 118  Q
    |||||||||||||||| ||  ||||||||||||| | || | |||||||||||| ||| ||||||||||||  |||| ||||||||| | ||| ||||||    
T  10990004 atctgagagcactaaggcagcgagaaagaagaagcagcaagagaacaaagtgaatccttctagctttaacttagccgaaatgaggactcgtgcacaaaag 10990103  T
Q  119 ggtacctccaaagc 132  Q
    ||| ||||||||||    
T  10990104 ggttcctccaaagc 10990117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 3949324 - 3949434
Alignment:
Q  29 actaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggtacctcca 128  Q
    |||||| || || |||||||||||||||| ||||| |||||||||| |  ||| |||||||  ||| |||||||||| | ||  || |||||||||||||    
T  3949324 actaaggcagagggaaagaagaagaaacaggtgaataaagtgaagctttttagttttaactgagccagaatgaggactcgtgttcagaagggtacctcca 3949423  T
Q  129 aagcggccttg 139  Q
    |||| ||||||    
T  3949424 aagccgccttg 3949434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 31092283 - 31092408
Alignment:
Q  6 actatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggac 105  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||| |||| |||| |||||||| ||||||||||||||    
T  31092283 actatccaagtctatctgagagcactaagacagagagaaagaagaagaatcacgtgaataaagtgatgccttctagatttaactcagccggaatgaggac 31092382  T
Q  106 ccatgcccaaaagggtacctccaaag 131  Q
     | |||||||||||||||||||||||    
T  31092383 tcgtgcccaaaagggtacctccaaag 31092408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 14296412 - 14296241
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| |||||||||||||||| ||||||  | |||||||||||||||| ||  |||||||| |||||||| ||||||||||||| ||||||||||| |    
T  14296412 cactatccaagtctatctgagagtactaaggtagagagaaagaagaagaagcagatgaacaaaatgaagcctactagctttaactcagccggaatgagca 14296313  T
Q  105 cccatgcccaaaagggtacctccaaagcggcctt-gcagctatagaattgttggttcaattgtgatagaata 175  Q
    | | || ||||||||||||||||||||  ||||| |||| || | ||| |||||||||||||  ||||||||    
T  14296312 ctcgtgtccaaaagggtacctccaaagatgccttggcagatacataatagttggttcaattgcaatagaata 14296241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 37344586 - 37344719
Alignment:
Q  6 actatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggac 105  Q
    ||||| ||||||||| ||| ||||||||| || ||||||||||||||||||| |||||||||||||| | | |||| |||||||| |||||||||||||     
T  37344586 actatccaagtctatttgaaagcactaaggcagagagaaagaagaagaaacaggtgaacaaagtgaatcattctagttttaactcagccggaatgaggat 37344685  T
Q  106 ccatgcccaaaagggtacctccaaagcggccttg 139  Q
     | |||||||||||||| ||||||||| ||||||    
T  37344686 tcgtgcccaaaagggtatctccaaagccgccttg 37344719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 18811859 - 18811732
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| ||||| ||| |||||||| |||| || |||||||||||||||| || ||| | |||||||||| |  |||||||||||| |||||||||||||    
T  18811859 cactatccaagtttatttgagagcaataaggcagagagaaagaagaagaagcaggtgcataaagtgaagctttatagctttaactcagccggaatgagga 18811760  T
Q  105 cccatgcccaaaagggtacctccaaagc 132  Q
    ||| ||||||||||||  ||||||||||    
T  18811759 cccgtgcccaaaagggctcctccaaagc 18811732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 8413933 - 8413844
Alignment:
Q  43 aaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggtacctccaaagc 132  Q
    |||| ||||||| || | |||||||||||||||| ||||||| |||||  ||||||||||||||| ||| ||||||||||||||||||||    
T  8413933 aaagcagaagaagcaggcgaacaaagtgaagcctactagcttcaactcaaccggaatgaggacccgtgctcaaaagggtacctccaaagc 8413844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 13502655 - 13502775
Alignment:
Q  12 caagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgc 111  Q
    ||||||| || |||||||||||| || ||| |||||||||||| |  ||||||||||  | | |||||||||||||||| ||| ||||||||  || |||    
T  13502655 caagtctttcggagagcactaaggcagagaaaaagaagaagaagctcgtgaacaaaggaaggtctgctagctttaactcagccagaatgagggtccgtgc 13502754  T
Q  112 ccaaaagggtacctccaaagc 132  Q
    ||||||| ||| |||||||||    
T  13502755 ccaaaagagtaactccaaagc 13502775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 18693087 - 18693193
Alignment:
Q  22 tgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggt 121  Q
    ||||||||||||| || ||| ||||||||||   | ||  |||||||||||| |||||||||||||||  |||||||||||||||  |||| ||||||||    
T  18693087 tgagagcactaaggcagagaaaaagaagaag---cgtgcaaacaaagtgaagtctgctagctttaactaagccggaatgaggacctgtgcctaaaagggt 18693183  T
Q  122 acctccaaag 131  Q
     |||||||||    
T  18693184 tcctccaaag 18693193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 37049967 - 37050094
Alignment:
Q  6 actatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcc-tgctagctttaactctgccggaatgagga 104  Q
    ||||| ||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||||||||||| | |||| |||||||| |||||||||||||    
T  37049967 actatccaagtctatctgaaagcactaaggcagagaaaaagaagaagaaacatgtgaacaaagtgaagcctttctagttttaactcagccggaatgagga 37050066  T
Q  105 cccatgcccaaaagggtacctccaaagc 132  Q
    | | ||||||||||||||||||||||||    
T  37050067 ctcgtgcccaaaagggtacctccaaagc 37050094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 24239994 - 24239870
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| ||||||||||||||||||||||| ||  ||||||||||||| |    ||||| |||||||||||| ||||||||||||| |||||||||||||    
T  24239994 cactatccaagtctatctgagagcactaaggcatcgagaaagaagaagtag---gtgaataaagtgaagcctactagctttaactcagccggaatgagga 24239898  T
Q  105 cccatgcccaaaagggtacctccaaagc 132  Q
    ||| |||||||||||||||||| |||||    
T  24239897 cccgtgcccaaaagggtacctcaaaagc 24239870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 19852457 - 19852576
Alignment:
Q  12 caagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgc 111  Q
    |||||||||| |||||||||||| || ||| |||||||||||| || ||| ||||||||| ||||||||| ||||||||  |||||||||| |||| |||    
T  19852457 caagtctatcggagagcactaaggcagagaaaaagaagaagaagcacgtgcacaaagtgaggcctgctagttttaactcacccggaatgagaacccgtgc 19852556  T
Q  112 ccaaaagggtacctccaaag 131  Q
    ||||||| ||| ||||||||    
T  19852557 ccaaaagagtaactccaaag 19852576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 16593916 - 16593797
Alignment:
Q  12 caagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgc 111  Q
    |||||||||| |||||||||||| || ||| ||||||| |||| || ||| ||||||||| ||||||||| |||||||  ||||||||||| |||| |||    
T  16593916 caagtctatcggagagcactaaggcagagaaaaagaagtagaagcacgtgcacaaagtgaggcctgctagttttaacttagccggaatgagaacccgtgc 16593817  T
Q  112 ccaaaagggtacctccaaag 131  Q
    ||||||| ||| | ||||||    
T  16593816 ccaaaagagtaacgccaaag 16593797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 16832275 - 16832167
Alignment:
Q  24 agagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggtac 123  Q
    |||| |||||| || |||||| ||| ||||| ||||||||||||||||||||| ||| ||||||||| |  ||||||||||| | ||  ||||||||| |    
T  16832275 agagaactaaggcagagagaaggaataagaagcatgtgaacaaagtgaagcctactaactttaactcagttggaatgaggacacgtgttcaaaagggtgc 16832176  T
Q  124 ctccaaagc 132  Q
    |||||||||    
T  16832175 ctccaaagc 16832167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 35526718 - 35526596
Alignment:
Q  6 actatgcaagtctatctgagagcactaa----gacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatga 101  Q
    ||||| ||||||||||||||||||||||    ||||||||| ||||||||||| || ||||||||||||| |||| ||||||||||||| ||||||||||    
T  35526718 actatccaagtctatctgagagcactaattaagacaaagagtaagaagaagaagcaggtgaacaaagtgatgccttctagctttaactcggccggaatga 35526619  T
Q  102 ggacccatgcccaaaagggtacc 124  Q
    |||||| ||||||||||||||||    
T  35526618 ggacccgtgcccaaaagggtacc 35526596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 51524833 - 51524960
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| |||||||||||||||||| |||| |  |||||||||||||||| || ||| | ||||||| ||||  |||||||||||| |||||||||||||    
T  51524833 cactatccaagtctatctgagagcaataaggctgagagaaagaagaagaagcaggtgcataaagtgaggccttatagctttaactcagccggaatgagga 51524932  T
Q  105 cccatgcccaaaagggtacctccaaagc 132  Q
    ||| ||||||||||||  ||||||||||    
T  51524933 cccgtgcccaaaagggctcctccaaagc 51524960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 16893043 - 16893178
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| ||||||| || |||||||||||| || | | |||| | ||||| || |||||||||||||||||| |||| || ||||| |||||||||||||    
T  16893043 cactatccaagtctgtcagagagcactaaggcagataaaaagcaaaagaagcaggtgaacaaagtgaagcctactaggttcaactcagccggaatgagga 16893142  T
Q  105 cccatgcccaaaagggtacctccaaagcggccttgc 140  Q
    ||| ||| ||||||||| |||||||||| |||||||    
T  16893143 cccgtgctcaaaagggtgcctccaaagctgccttgc 16893178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 26796965 - 26796799
Alignment:
Q  14 agtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgccc 113  Q
    ||||||||||||||||||||| || |||||||||||||||| ||||| |||||||||||| || | ||||||||||| | || |||||||| |||| |||    
T  26796965 agtctatctgagagcactaaggcagagagaaagaagaagaagcatgttaacaaagtgaagtctaccagctttaactcagtcgaaatgaggaaccataccc 26796866  T
Q  114 aaaagggtacctccaaagcggccttg-cagctatagaattgttggttcaattgtgatagaatagcta 179  Q
    |||| ||| |||| ||||  |||||| |||||| | ||| ||||  ||| |||  ||||||||||||    
T  26796865 aaaatggtgcctctaaagttgccttgacagctacataatagttgcctcatttgcaatagaatagcta 26796799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 31067148 - 31067266
Alignment:
Q  12 caagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctg-ccggaatgaggacccatg 110  Q
    |||||||||| |||||||||||| || ||| |||||||||||| |||||| ||||||||| || ||||||||||||||| | | ||||||||||||| ||    
T  31067148 caagtctatcggagagcactaaggcagagaaaaagaagaagaagcatgtgcacaaagtgaggcttgctagctttaactcagtcgggaatgaggacccgtg 31067247  T
Q  111 cccaaaagggtacctccaa 129  Q
    || ||||| ||| ||||||    
T  31067248 cctaaaagtgtaactccaa 31067266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 29346765 - 29346898
Alignment:
Q  12 caagtctatctgagagcactaagacaaagagaaaga------agaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggac 105  Q
    ||||||||| |||||||||||||||| ||| |||||      ||||||| || |||||||| |||| ||||  |||||||||||  ||||||||||||||    
T  29346765 caagtctatttgagagcactaagacagagaaaaagaagaagaagaagaagcaggtgaacaacgtgatgccttatagctttaacttagccggaatgaggac 29346864  T
Q  106 ccatgcccaaaagggtacctccaaagcggccttg 139  Q
    || ||| |||||| ||||||||||||| ||||||    
T  29346865 ccgtgcacaaaagagtacctccaaagccgccttg 29346898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 39539107 - 39539071
Alignment:
Q  95 ggaatgaggacccatgcccaaaagggtacctccaaag 131  Q
    |||||||| |||||||||||||| |||||||||||||    
T  39539107 ggaatgagaacccatgcccaaaatggtacctccaaag 39539071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 29369070 - 29369230
Alignment:
Q  6 actatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggac 105  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||| |||| | ||||||||||  ||| ||||||||||    
T  29369070 actatccaagtctatctgagagcactaagacaaagataaagaagaagaagcacgtgaataaagtgatgccttcaagctttaactgagccagaatgaggac 29369169  T
Q  106 ccatgcccaaaagggtacctccaaagcggcctt-gcagctatagaattgttggttcaattg 165  Q
    || ||||||||||| ||| |||||| | ||||| |||| || ||||| |||||| ||||||    
T  29369170 ccgtgcccaaaaggatacatccaaatccgccttggcagatacagaatagttggtccaattg 29369230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 8831369 - 8831250
Alignment:
Q  12 caagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgc 111  Q
    ||||||||||||||||||||||| || ||| | |||||||||| ||  |||||||||||| |||||||||||||||||| |||||||||||||||| |||    
T  8831369 caagtctatctgagagcactaaggcagagaaagagaagaagaagcacatgaacaaagtgaggcctgctagctttaactcagccggaatgaggacccgtgc 8831270  T
Q  112 ccaaaagggtacctccaaag 131  Q
     |||||| ||| ||||||||    
T  8831269 tcaaaagtgtaactccaaag 8831250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 27786941 - 27786814
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| |||||||||||||||||| |||| |  ||||||||||||| || ||  |||| |||||||||||| ||||||||||||| |||||||||||||    
T  27786941 cactatccaagtctatctgagagcaataaggcggagagaaagaagaataagcagatgaataaagtgaagccttctagctttaactcagccggaatgagga 27786842  T
Q  105 cccatgcccaaaagggtacctccaaagc 132  Q
     || ||||||||| ||| ||||||||||    
T  27786841 gccgtgcccaaaatggttcctccaaagc 27786814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 36206567 - 36206448
Alignment:
Q  12 caagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgc 111  Q
    ||||||||||||||||||| ||| || |||||||||||||||| ||  |||| |||||||||||| ||||||||||||  | |||||||||||| | |||    
T  36206567 caagtctatctgagagcaccaaggcagagagaaagaagaagaagcaaatgaataaagtgaagccttctagctttaacttagtcggaatgaggactcgtgc 36206468  T
Q  112 ccaaaagggtacctccaaag 131  Q
    | ||||| || |||||||||    
T  36206467 ctaaaagagttcctccaaag 36206448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 28225860 - 28225659
Alignment:
Q  12 caagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgc 111  Q
    |||||||||||||||||||||||  | ||||| | |||||||| ||||||| ||||||||||  || || ||||||||| ||||||||||||||   ||     
T  28225860 caagtctatctgagagcactaaggtagagagagaaaagaagaagcatgtgatcaaagtgaagtttgttaactttaactcagccggaatgaggacatgtgt 28225761  T
Q  112 ccaaaagggtacctccaaagcggcctt-gcagctatagaattgttggttcaattgtgatagaatagctagcaatttcaat-attttgtacaaattttcat 209  Q
    |||||||| |||||| |||||   ||| ||| ||||| ||| ||||||||||| |  | || || ||||| ||| ||||| |||| ||||||| ||||||    
T  28225760 ccaaaaggatacctcaaaagctatcttggcaactataaaatagttggttcaatcgctaaagcatggctaggaatatcaataatttagtacaaactttcat 28225661  T
Q  210 ag 211  Q
    ||    
T  28225660 ag 28225659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 399874 - 399778
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatga 101  Q
    |||||| | ||| ||| ||||||||||||| || ||||||||||||||||||||||||||||||||| |  |||||||||||| || | ||||||||    
T  399874 cactatccgagtttatatgagagcactaaggcagagagaaagaagaagaaacatgtgaacaaagtgaggtttgctagctttaattcagtcggaatga 399778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 30646385 - 30646453
Alignment:
Q  60 tgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggtacctcca 128  Q
    ||||||||| |||||||||||| || ||||| || ||||||||  | | ||||||||||||||||||||    
T  30646385 tgaacaaagagaagcctgctagtttcaactcagcaggaatgagagctcgtgcccaaaagggtacctcca 30646453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 10232 - 10420
Alignment:
Q  12 caagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgc 111  Q
    |||||||||| |||||||||||| || ||| |||||||||||| || ||| ||||||||| ||||||||| |||||||| |||||||||||||||| |||    
T  10232 caagtctatcggagagcactaaggcagagaaaaagaagaagaagcacgtgcacaaagtgaggcctgctagttttaactcagccggaatgaggacccgtgc 10331  T
Q  112 ccaaaagggtacctccaaagcggcctt-gcagctatagaattgttggttcaattgtgatagaatagctagcaatttcaatattttgtac 199  Q
    | ||||| ||| ||||||||| | ||| ||||||| | ||| ||||||||| |||  | || |||| ||| ||| ||| ||||||||||    
T  10332 ctaaaagagtaactccaaagctgtcttggcagctacataatagttggttcatttgcaaaagcatagataggaatatcactattttgtac 10420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 19215349 - 19215482
Alignment:
Q  6 actatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggac 105  Q
    ||||| |||| |||| |||||||||||||||| |||||| ||||||||| || ||||||||||||| |||  ||||||||||||| ||| ||||||||||    
T  19215349 actatccaagcctatttgagagcactaagacagagagaatgaagaagaagcaggtgaacaaagtgatgccgtctagctttaactcagcccgaatgaggac 19215448  T
Q  106 ccatgcccaaaagggtacctccaaagcggccttg 139  Q
    ||  |||||||||||||||| |||| | ||||||    
T  19215449 ccgagcccaaaagggtaccttcaaaactgccttg 19215482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 165
Target Start/End: Complemental strand, 788428 - 788268
Alignment:
Q  6 actatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggac 105  Q
    ||||| ||||||||| |||||||| |||| || |||||||||||||||| ||  |||||||| |||||||| ||| ||||||||| | ||  ||||||||    
T  788428 actatccaagtctatttgagagcattaaggcagagagaaagaagaagaagcagatgaacaaaatgaagccttctaactttaactcagacgctatgaggac 788329  T
Q  106 ccatgcccaaaagggtacctccaaagcggccttg-cagctatagaattgttggttcaattg 165  Q
     | ||||||||||||| |||||||||| |||||| ||  ||||||||  ||||||||||||    
T  788328 tcgtgcccaaaagggttcctccaaagccgccttgacatatatagaataattggttcaattg 788268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 36868258 - 36868385
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| |||||  ||||||||||| ||||    |||||||||||||||| || ||||| |||||||||||| ||||||||||||| ||||||||||||     
T  36868258 cactatccaagttaatctgagagcaataaggtggagagaaagaagaagaagcaagtgaataaagtgaagccttctagctttaactcagccggaatgaggg 36868357  T
Q  105 cccatgcccaaaagggtacctccaaagc 132  Q
    ||| || |||||||||| ||||||||||    
T  36868358 cccgtgtccaaaagggttcctccaaagc 36868385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 15188032 - 15188140
Alignment:
Q  5 cactatgcaagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgagga 104  Q
    |||||| |||| |||| ||||||||||||  || ||| ||||||||||   ||| ||| |||||||||||||| |||||||||||| ||  |||||||||    
T  15188032 cactatccaagcctatatgagagcactaatgcagagaaaaagaagaag---catatgagcaaagtgaagcctgatagctttaactcagctagaatgagga 15188128  T
Q  105 cccatgcccaaa 116  Q
    ||| ||||||||    
T  15188129 cccgtgcccaaa 15188140  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 37307313 - 37307257
Alignment:
Q  13 aagtctatctgagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagt 69  Q
    |||||| |||||||||||||||  | |||||||||||||||| ||||||||||||||    
T  37307313 aagtctgtctgagagcactaaggtagagagaaagaagaagaagcatgtgaacaaagt 37307257  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 32278794 - 32278699
Alignment:
Q  71 aagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggtacctccaaagcggccttg-cagctatagaattgttggttcaattg 165  Q
    |||||| |||| |||||||| |||||||||| ||  | | |||||||||||||||||||||| |||||| ||| || ||||| || ||||||||||    
T  32278794 aagccttctagttttaactcagccggaatgaagattcgttcccaaaagggtacctccaaagccgccttgacagatacagaatagtgggttcaattg 32278699  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 36150718 - 36150672
Alignment:
Q  86 aactctgccggaatgaggacccatgcccaaaagggtacctccaaagc 132  Q
    ||||| |||||||||||||| | ||||||||||| ||||||||||||    
T  36150718 aactcagccggaatgaggactcgtgcccaaaaggatacctccaaagc 36150672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 19407958 - 19407870
Alignment:
Q  44 aagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggtacctccaaagc 132  Q
    ||||||||||| || |||||||||||||  ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  19407958 aagaagaagaagcaggtgaacaaagtgattccttctagctttaactcagccggaatgaggacccgtgcccaaaagggtacctccaaagc 19407870  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 26449672 - 26449565
Alignment:
Q  23 gagagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggta 122  Q
    |||||||||||| || |||||||| ||||||| || ||||||| |||||||||| ||||||| | ||| |||||||||||||| | || |||||||||||    
T  26449672 gagagcactaaggcagagagaaagcagaagaagcaggtgaacagagtgaagcctactagcttcagctcagccggaatgaggactcgtgtccaaaagggta 26449573  T
Q  123 cctccaaa 130  Q
    ||||||||    
T  26449572 cctccaaa 26449565  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 33191264 - 33191369
Alignment:
Q  25 gagcactaagacaaagagaaagaagaagaaacatgtgaacaaagtgaagcctgctagctttaactctgccggaatgaggacccatgcccaaaagggtacc 124  Q
    |||||||||  || ||| || ||||||||||||||||| ||||||||||||||||||||||||||| || |  |||||||||| |||||| |||||||||    
T  33191264 gagcactaaagcagagaaaatgaagaagaaacatgtgagcaaagtgaagcctgctagctttaactcagctgacatgaggacccgtgcccagaagggtacc 33191363  T
Q  125 tccaaa 130  Q
    | ||||    
T  33191364 ttcaaa 33191369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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