View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_low_5 (Length: 726)
Name: NF1048_low_5
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 283 - 726
Target Start/End: Original strand, 26197678 - 26198138
Alignment:
| Q |
283 |
aataatatagtttttggatgatgaaatgaatgctgttgaattgaaagaat--gcacggagaagttctatttatagttgtttatagatagatggaaggact |
380 |
Q |
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| T |
26197678 |
aataatatagtttttggatgatgaaatgaatgctgttgaattgaaagaatatgcacggagaagttctatttatagttgtttatagatagatggaaggact |
26197777 |
T |
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| Q |
381 |
ttttctttaaggaagatagatggaaggatatgttggaccatactttggaaaagtatagaaattattattgcatgaagctttgacttgttaatttcac--- |
477 |
Q |
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| T |
26197778 |
ttttctttaaggaagatagatggaaggacatgttggaccatactttggaaaagtagagaaattattattgcatgaagctttgacttgttaatttcacgtt |
26197877 |
T |
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| Q |
478 |
----------gttgggaatgaggtggaagtttcattgttatccagaagactaataaaaaatgtacacgtgtcaagggtgtcgtggtccttaaaatggaaa |
567 |
Q |
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| T |
26197878 |
ggaaattaatgttgggaatgaggtggaagtttcattgttatccagaagactaataaaaaatgtacacgtgttaagggtgtcgtggtccttaaaatggaaa |
26197977 |
T |
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| Q |
568 |
tttaatttctaaggg--nnnnnnntgaatgaatgaggtggattgcttgttgaattgacctagtagaagaagttagatttagagggaacttttctaaaatg |
665 |
Q |
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| T |
26197978 |
tttaatttctatgggaaaaaaaaatgaatgaatgaggtggattgcttgttgaattgacctagtagaagaagttagatttagagggaactttcctaaaatg |
26198077 |
T |
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| Q |
666 |
ttggtcaatttagtgtcacggaattgagggtgctgactcatcgtattgatccacttggcct |
726 |
Q |
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| T |
26198078 |
ttggtcaatttagtgtcacggaattgatggtgctgactcatcgtattaatccacttggcct |
26198138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 26197484 - 26197686
Alignment:
| Q |
30 |
aagccaacatccgacgaatactcacggaacgcgccggcttgaagctgtttgatctcttgatgttcttggagaatatgtttgatgaatttgaaaggataag |
129 |
Q |
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| T |
26197484 |
aagccaacatccgacgaatactcacggaacgcgccggcttgaagctgtttgatctcttgatgttcttggagaatatgtttgatgaatttgaaaggataag |
26197583 |
T |
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| Q |
130 |
gtacaccaaagcttggactaggatgaacatagccaccttcaataacatgtcacctaagctactatccatcttttgatcaaaatttgtgcttacaaataat |
229 |
Q |
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| T |
26197584 |
gtacaccaaagcttggactaggacgaacatagccaccttcaataacatgtctcctaagctactatccatcttcagatcaaattttgtgctaacaaataat |
26197683 |
T |
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| Q |
230 |
ata |
232 |
Q |
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||| |
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| T |
26197684 |
ata |
26197686 |
T |
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