View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1048_low_51 (Length: 297)

Name: NF1048_low_51
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1048_low_51
NF1048_low_51
[»] chr1 (1 HSPs)
chr1 (31-286)||(42624851-42625106)
[»] chr3 (3 HSPs)
chr3 (55-130)||(36072361-36072436)
chr3 (53-130)||(34920119-34920196)
chr3 (46-102)||(38722355-38722411)
[»] chr7 (1 HSPs)
chr7 (206-271)||(35433101-35433166)
[»] chr4 (1 HSPs)
chr4 (58-106)||(56335257-56335305)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 31 - 286
Target Start/End: Complemental strand, 42625106 - 42624851
Alignment:
Q  31 tcatggacctaattaaacttttttgaataacatgaacatatctcagcaaggtagcgtctaactcaatcaatctcttcgaactatacttacaaaatataga 130  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42625106 tcatggacctaattaaacttttctgaataacatgaacatatctcagcaaggtagcgtctaactcaatcaatctcttcgaactatacttacaaaatataga 42625007  T
Q  131 tagcatgattttcacgctgtcgtcgttctggagttttatcagagtgaaatgaacacgattatctgagtgaatcgacatactacaatactctacactgtct 230  Q
    |||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  42625006 tagcatgattttcacattgtcgtcgttctggagtttcatcagggtgaaatgaacacgattatctgaatggatcgacatactacaatactctacactgtct 42624907  T
Q  231 acccttcttgtatcgcattggttgagacgattattaatttgattcagttgattcat 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42624906 acccttcttgtatcgcattggttgagacgattattaatttgattcagttgattcat 42624851  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 36072361 - 36072436
Alignment:
Q  55 gaataacatgaacatatctcagcaaggtagcgtctaactcaatcaatctcttcgaactatacttacaaaatataga 130  Q
    |||||| ||||||| |||||| |||| ||||||||||||  ||| ||| |||||||||||||| || |||||||||    
T  36072361 gaataaaatgaacaaatctcatcaagatagcgtctaacttgatcgatcccttcgaactatactgaccaaatataga 36072436  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 34920119 - 34920196
Alignment:
Q  53 ttgaataacatgaacatatctcagcaaggtagcgtctaactcaatcaatctcttcgaactatacttacaaaatataga 130  Q
    ||||||| |||||||  || ||| |||| || | ||| |||||||||||||||| |||||||||| ||||||||||||    
T  34920119 ttgaatagcatgaacggatatcaccaagataacatcttactcaatcaatctctttgaactatactgacaaaatataga 34920196  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 38722355 - 38722411
Alignment:
Q  46 aacttttttgaataacatgaacatatctcagcaaggtagcgtctaactcaatcaatc 102  Q
    |||||||| ||||| | ||||||||||||| |||| || | ||||||||||||||||    
T  38722355 aactttttcgaatagcctgaacatatctcaccaagatatcatctaactcaatcaatc 38722411  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 35433101 - 35433166
Alignment:
Q  206 catactacaatactctacactgtctacccttcttgtatcgcattggttgagacgattattaatttg 271  Q
    ||||| ||||||||| |||||||| |||||||||| ||| |  ||||||||||||| |||||||||    
T  35433101 catacgacaatactccacactgtccacccttcttgcatctccgtggttgagacgatcattaatttg 35433166  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 56335257 - 56335305
Alignment:
Q  58 taacatgaacatatctcagcaaggtagcgtctaactcaatcaatctctt 106  Q
    |||||||||||||| ||| |||||||||||||||||| |||| ||||||    
T  56335257 taacatgaacatatttcatcaaggtagcgtctaactcgatcagtctctt 56335305  T

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