View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1048_low_52 (Length: 293)

Name: NF1048_low_52
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1048_low_52
NF1048_low_52
[»] chr2 (10 HSPs)
chr2 (65-215)||(40728741-40728891)
chr2 (71-215)||(35670084-35670229)
chr2 (71-213)||(18292060-18292203)
chr2 (71-209)||(40448232-40448371)
chr2 (71-215)||(41339570-41339717)
chr2 (87-213)||(34397188-34397315)
chr2 (90-195)||(44789272-44789375)
chr2 (97-215)||(12773776-12773895)
chr2 (147-215)||(28266544-28266613)
chr2 (147-195)||(23827782-23827830)
[»] chr1 (14 HSPs)
chr1 (65-215)||(18472253-18472403)
chr1 (98-215)||(8422301-8422419)
chr1 (71-209)||(43406683-43406822)
chr1 (71-209)||(338859-338998)
chr1 (71-209)||(37666496-37666634)
chr1 (71-195)||(35761346-35761471)
chr1 (71-209)||(6836646-6836786)
chr1 (147-215)||(33007044-33007113)
chr1 (162-215)||(19198208-19198264)
chr1 (147-195)||(16111136-16111184)
chr1 (147-195)||(24276151-24276199)
chr1 (148-215)||(33009136-33009204)
chr1 (137-195)||(16075468-16075527)
chr1 (162-209)||(24055675-24055722)
[»] chr5 (10 HSPs)
chr5 (71-215)||(38001724-38001868)
chr5 (71-215)||(42862119-42862263)
chr5 (65-215)||(30910503-30910654)
chr5 (87-214)||(6309441-6309569)
chr5 (71-215)||(40691620-40691766)
chr5 (71-209)||(537571-537710)
chr5 (71-142)||(4557379-4557450)
chr5 (156-209)||(23211200-23211253)
chr5 (65-109)||(38279263-38279307)
chr5 (71-123)||(42640267-42640319)
[»] chr8 (8 HSPs)
chr8 (66-215)||(6150264-6150414)
chr8 (71-215)||(44436846-44436991)
chr8 (65-195)||(41957770-41957900)
chr8 (71-195)||(40840841-40840966)
chr8 (71-201)||(22815649-22815780)
chr8 (162-209)||(35840901-35840948)
chr8 (162-195)||(12659346-12659379)
chr8 (162-191)||(10251009-10251038)
[»] chr7 (14 HSPs)
chr7 (65-213)||(12196065-12196214)
chr7 (65-215)||(12911042-12911193)
chr7 (71-209)||(10288107-10288246)
chr7 (71-189)||(22078399-22078517)
chr7 (71-195)||(48653144-48653269)
chr7 (71-209)||(11035700-11035838)
chr7 (65-215)||(40106556-40106707)
chr7 (71-215)||(13163589-13163735)
chr7 (71-215)||(49169656-49169801)
chr7 (71-209)||(15873292-15873431)
chr7 (71-215)||(21490807-21490950)
chr7 (129-215)||(18366701-18366788)
chr7 (97-209)||(9994073-9994186)
chr7 (168-215)||(24056671-24056719)
[»] chr6 (11 HSPs)
chr6 (71-215)||(13772726-13772871)
chr6 (71-209)||(10750945-10751084)
chr6 (71-213)||(26182009-26182152)
chr6 (71-209)||(32449582-32449721)
chr6 (71-209)||(34636938-34637077)
chr6 (129-209)||(23260026-23260106)
chr6 (71-148)||(23259947-23260025)
chr6 (113-215)||(20559539-20559641)
chr6 (137-215)||(24164536-24164615)
chr6 (164-215)||(31275943-31275995)
chr6 (147-191)||(11166045-11166089)
[»] chr4 (7 HSPs)
chr4 (71-215)||(55162936-55163081)
chr4 (71-194)||(70066-70190)
chr4 (71-209)||(40459702-40459841)
chr4 (80-215)||(28968564-28968700)
chr4 (66-215)||(49499801-49499951)
chr4 (89-195)||(2761427-2761535)
chr4 (147-195)||(10276814-10276862)
[»] chr3 (12 HSPs)
chr3 (71-215)||(9104842-9104987)
chr3 (71-215)||(46403916-46404061)
chr3 (71-209)||(16976069-16976208)
chr3 (71-208)||(5004045-5004183)
chr3 (71-215)||(43277359-43277504)
chr3 (72-209)||(7336009-7336147)
chr3 (71-215)||(11937207-11937350)
chr3 (163-215)||(17542113-17542166)
chr3 (147-195)||(5704681-5704729)
chr3 (162-215)||(8731487-8731541)
chr3 (162-215)||(9083374-9083428)
chr3 (162-195)||(1461523-1461556)
[»] scaffold1838 (1 HSPs)
scaffold1838 (71-215)||(932-1076)
[»] scaffold0413 (1 HSPs)
scaffold0413 (71-209)||(183-322)
[»] scaffold0657 (1 HSPs)
scaffold0657 (71-209)||(1654-1793)
[»] scaffold0041 (1 HSPs)
scaffold0041 (71-195)||(32664-32786)
[»] scaffold0069 (1 HSPs)
scaffold0069 (148-204)||(11454-11510)
[»] scaffold0120 (1 HSPs)
scaffold0120 (147-195)||(2115-2163)
[»] scaffold0002 (1 HSPs)
scaffold0002 (148-195)||(356356-356403)
[»] scaffold0013 (1 HSPs)
scaffold0013 (137-215)||(242428-242508)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 40728741 - 40728891
Alignment:
Q  65 cgatcgaaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatca 164  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||| |||||||||||||||||||||| | |||    
T  40728741 cgatcaaaaacccaatttgtcccccgtacgcacttcaagcaaaaacttcaaagcatagactatctcttctttggtacctaaaatattagtgtaagggtca 40728840  T
Q  165 atttccttatccaaattggttcatactcaaaacaccaaaacaatgtcataa 215  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  40728841 atttccttattcaaattggttcatactcaaagcaccaaaacaatgtcataa 40728891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 35670084 - 35670229
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    |||||| |||||||| |||| |||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||||||| | |||||||||    
T  35670084 aaaacctaatttgtcccccgaacgcacttcaagcaaaaacttcaaagcatataccatctcttctttggtacctaaaatattagtgtaagggtcaatttcc 35670183  T
Q  171 ttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||||||||||||| |||||||| ||| | ||||||||||||||    
T  35670184 ttatccaaattggttcctactcaaagcacaagaaacaatgtcataa 35670229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 18292060 - 18292203
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    |||||||||||| || ||| || |||||||||| ||||||||||||||||| | ||||||||||| |||||||||||| ||||||||| | |||||||||    
T  18292060 aaaacccaatttatcccccatatgcacttcaagcaaaaacttcaaagcataaatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttcc 18292159  T
Q  171 ttatccaaattggttcatactcaaaacacca-aaacaatgtcat 213  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||    
T  18292160 ttatccaaattggttcatcctcaaagcaccagaaacaatgtcat 18292203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 40448371 - 40448232
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| |||||| |||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||| |||||| || | ||||||||    
T  40448371 aaaacccaatttcgtcccccgtaagcacttcaagcaaaaacttcaaagtatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttc 40448272  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||| ||| | |||||||    
T  40448271 cttatccaaattggttcatactcaaagcacaagaacaatg 40448232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 41339570 - 41339717
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaa-acttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||| |||||||| ||| ||||||||||||| |||| |||||||||||| || ||||| |||||  ||||||||||||||||||||| | ||||||||    
T  41339570 aaaacctaatttgtcccccatacgcacttcaagcaaaaaacttcaaagcatggaccatcttttctttcgtacctaaaatattagtgtaagggtcaatttc 41339669  T
Q  170 cttatccaaattggttcatactcaaaa-cacca-aaacaatgtcataa 215  Q
    ||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  41339670 cttatccaaattggttcatactcaaaagcaccataaacaaagtcataa 41339717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 87 - 213
Target Start/End: Original strand, 34397188 - 34397315
Alignment:
Q  87 cccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttccttatccaaattggttc 186  Q
    |||||||| |||||||| ||||||||||||||  ||| ||||||||||| |||||||||||| ||||||||| | ||||||||||||| ||||||| |||    
T  34397188 cccgtacgtacttcaagcaaaaacttcaaagctcagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttattcaaattgattc 34397287  T
Q  187 atactcaaaacacca-aaacaatgtcat 213  Q
    ||||||||| ||||| ||||||||||||    
T  34397288 atactcaaagcaccagaaacaatgtcat 34397315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 44789375 - 44789272
Alignment:
Q  90 gtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttccttatccaaattggttcata 189  Q
    |||||||||||| | || |||||||||||||||| |||||  |||| |||||||||||| ||||||| | | ||||||||||||||||||||||||||||    
T  44789375 gtacgcacttcaggcaataacttcaaagcatagaccatct--tctttggtacctaaaatgttagtgtgagggtcaatttccttatccaaattggttcata 44789278  T
Q  190 ctcaaa 195  Q
    ||||||    
T  44789277 ctcaaa 44789272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 12773776 - 12773895
Alignment:
Q  97 cttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttccttatccaaattggttcatactcaaaa 196  Q
    ||||||| ||||||  | ||||||| |  |||||||||| |||||||||||  |||||||||   ||||||| ||||||||||||||||||||||||||     
T  12773776 cttcaagcaaaaacaccgaagcatacactatctcttctttggtacctaaaaggttagtgtaagtgtcaattttcttatccaaattggttcatactcaaag 12773875  T
Q  197 cacca-aaacaatgtcataa 215  Q
    ||| | ||||||||||||||    
T  12773876 cacaagaaacaatgtcataa 12773895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 28266544 - 28266613
Alignment:
Q  147 atattagtgtaatgatcaatttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||| ||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  28266544 atattaatgtaagggtcaatttccttatccaaattggttcatactcaaagcaccagaaacaatgtcataa 28266613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 23827782 - 23827830
Alignment:
Q  147 atattagtgtaatgatcaatttccttatccaaattggttcatactcaaa 195  Q
    |||||| ||||| | | ||||||||||||||||||||||||||||||||    
T  23827782 atattaatgtaagggttaatttccttatccaaattggttcatactcaaa 23827830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 18472253 - 18472403
Alignment:
Q  65 cgatcgaaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatca 164  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| | |||    
T  18472253 cgatcaaaaacccaatttgtcccccgtacacacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatattagtgtaagggtca 18472352  T
Q  165 atttccttatccaaattggttcatactcaaaacaccaaaacaatgtcataa 215  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  18472353 attttcttatccaaattggttcatactcaaagcaccaaaacaatgtcataa 18472403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 8422419 - 8422301
Alignment:
Q  98 ttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttccttatccaaattggttcatactcaaaac 197  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |    
T  8422419 ttcaagtaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaagc 8422320  T
Q  198 acca-aaacaatgtcataa 215  Q
    |||| ||||||||||||||    
T  8422319 accagaaacaatgtcataa 8422301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 43406683 - 43406822
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| || |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |||||| || | ||||||||    
T  43406683 aaaacccaatttcgtcccctgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttc 43406782  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||| ||| | |||||||    
T  43406783 cttatccaaattggttcatactcaaagcacaagaacaatg 43406822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 338998 - 338859
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| |||||| |||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||| |||||| || | ||||||||    
T  338998 aaaacccaatttcgtcccccgtaagcacttcaagcaaaaacttcaaagtatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttc 338899  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||| ||| | |||||||    
T  338898 cttatccaaattggttcatactcaaagcacaagaacaatg 338859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 37666496 - 37666634
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| ||||||||||||||||| |||| || ||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||    
T  37666496 aaaacccaatttcgtcccccgtacgcacttcaagcaaaa-ctacaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttc 37666594  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||| ||| | |||||||    
T  37666595 cttatccaaattggttcatactcaaagcacaagaacaatg 37666634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 35761346 - 35761471
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||| ||||||| ||| ||||||||||||||||| |||||||||||||||||||  || ||||||| |||||||||||| ||||||||| | ||||||||    
T  35761346 aaaatccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagacaatatcttctttggtacctaaaatgttagtgtaagggtcaatttc 35761445  T
Q  170 cttatccaaattggttcatactcaaa 195  Q
    ||||||||||||||||||||||||||    
T  35761446 cttatccaaattggttcatactcaaa 35761471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 6836786 - 6836646
Alignment:
Q  71 aaaacccaatttgt--ctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaattt 168  Q
    ||||||||||||||  | ||||||||||||||||| ||| ||  ||||||||| | |||  |||||| |||||||||||| ||||||||| | |||||||    
T  6836786 aaaacccaatttgttccccccgtacgcacttcaagcaaacacaccaaagcatacaccattccttctttggtacctaaaatgttagtgtaagggtcaattt 6836687  T
Q  169 ccttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    ||||||||||||||||||||||| ||| ||| | |||||||    
T  6836686 ccttatccaaattggttcatacttaaagcacaagaacaatg 6836646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 33007044 - 33007113
Alignment:
Q  147 atattagtgtaatgatcaatttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||| ||||| | ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||    
T  33007044 atattaatgtaagggtcaatttccttatccaaattgattcatactcaaagcaccagaaacaatgtcataa 33007113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 19198208 - 19198264
Alignment:
Q  162 tcaatttccttatccaaattggttcatactcaaaacacca---aaacaatgtcataa 215  Q
    |||||||||||||||||||||||||||||||||| ||| |   ||||||||||||||    
T  19198208 tcaatttccttatccaaattggttcatactcaaagcacaagataaacaatgtcataa 19198264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 16111184 - 16111136
Alignment:
Q  147 atattagtgtaatgatcaatttccttatccaaattggttcatactcaaa 195  Q
    |||||| ||||| | ||||||| ||||||||||||||||||||||||||    
T  16111184 atattaatgtaagggtcaattttcttatccaaattggttcatactcaaa 16111136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 24276199 - 24276151
Alignment:
Q  147 atattagtgtaatgatcaatttccttatccaaattggttcatactcaaa 195  Q
    |||||| ||||| | |||||||| |||||||||||||||||||||||||    
T  24276199 atattaatgtaagggtcaatttctttatccaaattggttcatactcaaa 24276151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 33009204 - 33009136
Alignment:
Q  148 tattagtgtaatgatcaatttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||| ||||| | ||||||| ||||||||||||||||||| |||||| ||| | ||||||||||||||    
T  33009204 tattaatgtaagggtcaattttcttatccaaattggttcatgctcaaagcacaagaaacaatgtcataa 33009136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 16075527 - 16075468
Alignment:
Q  137 ggtacctaaaatattagtgtaatga-tcaatttccttatccaaattggttcatactcaaa 195  Q
    |||||||||||| || |||||| |  ||||||||||||||||| ||||||||||||||||    
T  16075527 ggtacctaaaatgttggtgtaaaggctcaatttccttatccaagttggttcatactcaaa 16075468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 24055675 - 24055722
Alignment:
Q  162 tcaatttccttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||| ||||||||| ||| | |||||||    
T  24055675 tcaatttccttatccaaattggttgatactcaaagcacaagaacaatg 24055722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 38001868 - 38001724
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||    ||||||||    
T  38001868 aaaacccaatttgtccctcgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttgatacctaaaatattagtgtaagagccaatttcc 38001769  T
Q  171 ttatccaaattggttcatactcaaaacaccaaaacaatgtcataa 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  38001768 ttatccaaattggttcatacacaaaacaccaaaacaatgtcataa 38001724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 42862263 - 42862119
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||||||| | ||||||| |    
T  42862263 aaaatccaatttgtcccccgtacgcacttcaagcaaaaacttcaaagcataaatcatctcttctttggtacctaaaatattagtgtaagggtcaattttc 42862164  T
Q  171 ttatccaaattggttcatactcaaaacaccaaaacaatgtcataa 215  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||    
T  42862163 ttatccaaattagtttatactcaaagcaccaaaacaatgtcataa 42862119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 30910654 - 30910503
Alignment:
Q  65 cgatcgaaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatca 164  Q
    ||||| ||||||||||||||  | ||||||||||| ||| ||||||||||||||||| | |||||||||||  ||||||||||||||||||||| | |||    
T  30910654 cgatcaaaaacccaatttgttcctcgtacgcactttaagcaaaaacttcaaagcataaaccatctcttctttcgtacctaaaatattagtgtaagggtca 30910555  T
Q  165 atttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30910554 atttccttatccaaattggttcatactcaaaacaccataaacaatgtcataa 30910503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 6309569 - 6309441
Alignment:
Q  87 cccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttccttatccaaattggttc 186  Q
    |||||| |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||    
T  6309569 cccgtatgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttc 6309470  T
Q  187 atactcaaaacacca-aaacaatgtcata 214  Q
    ||||||||| ||||| |||| ||||||||    
T  6309469 atactcaaagcaccagaaactatgtcata 6309441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 40691766 - 40691620
Alignment:
Q  71 aaaacccaatttgt-ctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    ||||| |||||||| | ||||||||||||||||| |||||||| |||||||||| ||| ||||||| |||||||||||| ||||||||| | ||||||||    
T  40691766 aaaactcaatttgttcccccgtacgcacttcaagcaaaaactttaaagcatagaccatatcttctttggtacctaaaatgttagtgtaagggtcaatttc 40691667  T
Q  170 cttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  40691666 cttatccaaattggttcatactcaaagcaccagaaacaatatcataa 40691620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 537710 - 537571
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| |||||| ||||||| || ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||    
T  537710 aaaacccaatttcgtcccccgtatgcacttccagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttc 537611  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    ||||||||||||||||||||| |||| ||| | |||||||    
T  537610 cttatccaaattggttcatacccaaagcacaagaacaatg 537571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 4557379 - 4557450
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacc 142  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||| ||||||||| | ||||||    
T  4557379 aaaacccaatttgtcccccgtacgcacttcaaacaaaaacttcaaagcatagaccatctcttcattggtacc 4557450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 23211253 - 23211200
Alignment:
Q  156 taatgatcaatttccttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| | |||||||    
T  23211253 taatggtcaatttccttatccaaattggttcatactcaaagcacaataacaatg 23211200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 38279307 - 38279263
Alignment:
Q  65 cgatcgaaaacccaatttgtctcccgtacgcacttcaagtaaaaa 109  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||    
T  38279307 cgatcaaaaacccaatttgtcccccgtacgcacttcaagcaaaaa 38279263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 42640319 - 42640267
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcataga 123  Q
    |||| |||||| |||  |||||||||||||||| |||||||||||||||||||    
T  42640319 aaaatccaattcgtccaccgtacgcacttcaagcaaaaacttcaaagcataga 42640267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 66 - 215
Target Start/End: Complemental strand, 6150414 - 6150264
Alignment:
Q  66 gatcgaaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaa 165  Q
    |||| |||||| ||||||||  |||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||| ||||||||| | ||||    
T  6150414 gatcaaaaacctaatttgtcctccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatgttagtgtaagggtcaa 6150315  T
Q  166 tttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6150314 tttccttatccaaattggttcatactcaaaacaccagaaacaatgtcataa 6150264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 44436991 - 44436846
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | || ||||||    
T  44436991 aaaacccaatttgtcccccatacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcgatttcc 44436892  T
Q  171 ttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||||||||| |||||||||||| ||||| ||||||||||||||    
T  44436891 ttatccaaattgattcatactcaaagcaccagaaacaatgtcataa 44436846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 65 - 195
Target Start/End: Original strand, 41957770 - 41957900
Alignment:
Q  65 cgatcgaaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatca 164  Q
    ||||| |||| ||||||| || ||| |||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |||    
T  41957770 cgatcaaaaatccaatttatcccccatacgcactacaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtgtaagggtca 41957869  T
Q  165 atttccttatccaaattggttcatactcaaa 195  Q
    |||||||||||||||||||||||||||||||    
T  41957870 atttccttatccaaattggttcatactcaaa 41957900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 40840841 - 40840966
Alignment:
Q  71 aaaacccaatttgtctccc-gtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||| |||||||||| ||| |||||||||||||| |||||||| |||||||||| ||||||||||| ||||| |||||| ||||||||| | ||||||||    
T  40840841 aaaatccaatttgtccccccgtacgcacttcaagcaaaaactttaaagcatagaccatctcttctttggtacataaaatgttagtgtaagggtcaatttc 40840940  T
Q  170 cttatccaaattggttcatactcaaa 195  Q
    |||||||||||| |||||||||||||    
T  40840941 cttatccaaattagttcatactcaaa 40840966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 22815649 - 22815780
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||  |||||||| | |||||||||||| ||| ||||| | ||||||||    
T  22815649 aaaacccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaatcatagactatctcttcattggtacctaaaatgttaatgtaagggtcaatttc 22815748  T
Q  170 cttatccaaattggttcatactcaaaacacca 201  Q
     ||||||||||||||||||||||||| |||||    
T  22815749 attatccaaattggttcatactcaaagcacca 22815780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 35840948 - 35840901
Alignment:
Q  162 tcaatttccttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||    
T  35840948 tcaatttccttatccaaattggttcatactcaaagcacaagaacaatg 35840901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 12659346 - 12659379
Alignment:
Q  162 tcaatttccttatccaaattggttcatactcaaa 195  Q
    ||||||||||||||||||||||||||||||||||    
T  12659346 tcaatttccttatccaaattggttcatactcaaa 12659379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 10251038 - 10251009
Alignment:
Q  162 tcaatttccttatccaaattggttcatact 191  Q
    ||||||||||||||||||||||||||||||    
T  10251038 tcaatttccttatccaaattggttcatact 10251009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 12196065 - 12196214
Alignment:
Q  65 cgatcgaaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatca 164  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||   |||    
T  12196065 cgatcaaaaacccaatttgtcccccgtacgcacttcaagcaaaaacttcaaagtatagaccatctcttctttggtacctaaaatgttagtgtaagagtca 12196164  T
Q  165 atttccttatccaaattggttcatactcaaaacacca-aaacaatgtcat 213  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  12196165 atttccttatccaaattggttcatactcaaagcaccataaacaatgtcat 12196214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 12911042 - 12911193
Alignment:
Q  65 cgatcgaaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatca 164  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||| | |||    
T  12911042 cgatcaaaaacccaatttgtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccatatctgctttggtacctaaaatattagtgtaagggtca 12911141  T
Q  165 atttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||| |||||||||||||||||||||||||| ||| | ||||||||||||||    
T  12911142 attttcttatccaaattggttcatactcaaagcacaagaaacaatgtcataa 12911193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 10288107 - 10288246
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||    
T  10288107 aaaacccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttc 10288206  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||| ||| | |||||||    
T  10288207 cttatccaaattggttcatactcaaagcacaagaacaatg 10288246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 22078517 - 22078399
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    |||||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||||||    
T  22078517 aaaacccaatatgtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtgtaagggtcaatttcc 22078418  T
Q  171 ttatccaaattggttcata 189  Q
    |||||||||||||||||||    
T  22078417 ttatccaaattggttcata 22078399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 48653144 - 48653269
Alignment:
Q  71 aaaacccaatttgtctcccg-tacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| | ||||||||    
T  48653144 aaaacccaatttgtcccccggtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattaatgtaagggtcaatttc 48653243  T
Q  170 cttatccaaattggttcatactcaaa 195  Q
    ||||||||||||||||||||||||||    
T  48653244 cttatccaaattggttcatactcaaa 48653269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 11035700 - 11035838
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||    
T  11035700 aaaacccaattttgtc-cccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttc 11035798  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||| ||| | |||||||    
T  11035799 cttatccaaattggttcatactcaaagcacaagaacaatg 11035838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 40106707 - 40106556
Alignment:
Q  65 cgatcgaaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatca 164  Q
    ||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||| |||||||||||| ||| ||||| | |||    
T  40106707 cgatcaaaaatccaatttgtcccccgtacgcacttcaagcaaaaacttcaaagcatagacaatctcttcttaggtacctaaaattttaatgtaagggtca 40106608  T
Q  165 atttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||| |||||||||||||||||||||||| ||| | ||||||||||||||    
T  40106607 atttccatatccaaattggttcatactcaaagcacaagaaacaatgtcataa 40106556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 13163589 - 13163735
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| | ||||||||||||||  ||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||| | ||||||||    
T  13163589 aaaacccaattttgtccctcgtacgcacttcaaacaaaaacttcaaagcatagaccatctattctttggtatctaaaatattagtgtaagggtcaatttc 13163688  T
Q  170 cttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  13163689 cttaaccaaattggttcatactcaaagcaccagaaacaatgtcataa 13163735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 49169656 - 49169801
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    ||||| ||||||||| | ||||||||||||||| |||||||||||| |||||| ||||||||||| |||||||||||| ||| ||||  | ||||||| |    
T  49169656 aaaactcaatttgtcccacgtacgcacttcaagcaaaaacttcaaatcatagaacatctcttctttggtacctaaaatgttaatgtaggggtcaattttc 49169755  T
Q  171 ttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  49169756 ttatccaaattggttcatactcaaagcaccagaaacaatgtcataa 49169801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 15873292 - 15873431
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| ||||||  |||||| || ||||||||||||||||||| ||||||||||| |||||||||||| |||||| || | ||||||||    
T  15873292 aaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttc 15873391  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||| ||| | |||||||    
T  15873392 cttatccaaattggttcatactcaaagcacaagaacaatg 15873431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 21490807 - 21490950
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    |||||||||||| |  |||| |||| ||||||| |||| |  ||||||||| | ||| ||||||| |||||||||||| ||||||||| | |||||||||    
T  21490807 aaaacccaatttcttccccgcacgcgcttcaagcaaaa-caccaaagcataca-catgtcttctttggtacctaaaatgttagtgtaagggtcaatttcc 21490904  T
Q  171 ttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  21490905 ttatccaaattggttcatactcaaagcacaagaaacaatgtcataa 21490950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 18366701 - 18366788
Alignment:
Q  129 tcttcttcggtacctaaaatattagtgtaatgatcaatttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||||||||| |||| ||| | ||||||||||||||    
T  18366701 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatacccaaagcacaagaaacaatgtcataa 18366788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 9994186 - 9994073
Alignment:
Q  97 cttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatc-aatttccttatccaaattggttcatactcaaa 195  Q
    ||||||| ||||||  ||||||||| | ||| ||||||| | |||||||||| ||||||| | |  | ||||||||||||||||||||||||||||||||    
T  9994186 cttcaagcaaaaacaccaaagcatacaccatgtcttctttgatacctaaaatgttagtgttaggggccaatttccttatccaaattggttcatactcaaa 9994087  T
Q  196 acaccaaaacaatg 209  Q
     ||| | |||||||    
T  9994086 gcacaagaacaatg 9994073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 24056671 - 24056719
Alignment:
Q  168 tccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||| |||||||||||| ||| | ||||||||||||||    
T  24056671 tccttatccaaattgattcatactcaaagcactagaaacaatgtcataa 24056719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 13772726 - 13772871
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    ||||||||||||||| |||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||   |||||||||    
T  13772726 aaaacccaatttgtcccccgtacgcacttctagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtgtaagagtcaatttcc 13772825  T
Q  171 ttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||    
T  13772826 ttatccaaattggttcatactcaaagcacaagaaacaatgtcataa 13772871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 10750945 - 10751084
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||    
T  10750945 aaaacccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttc 10751044  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||| ||| | |||||||    
T  10751045 cttatccaaattggttcatactcaaagcacaagaacaatg 10751084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 26182009 - 26182152
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||  ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||    
T  26182009 aaaacccaattttgttccccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttc 26182108  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatgtcat 213  Q
    |||||| ||||||||||||||||||| ||||  |||||||||||    
T  26182109 cttatcaaaattggttcatactcaaagcaccggaacaatgtcat 26182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 32449582 - 32449721
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| ||||||||||||||||| || |||||||| ||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||    
T  32449582 aaaacccaatttcgtcccccgtacgcacttcaagcaagaacttcaatgcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttc 32449681  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||| ||| | |||||||    
T  32449682 cttatccaaattggttcatactcaaagcacaagaacaatg 32449721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 34637077 - 34636938
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||| ||||||| ||| ||||||  |||||| || ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||    
T  34637077 aaaatccaatttcgtcccccgtatacacttccagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttc 34636978  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    ||||||||||||||||||||| |||| ||| | |||||||    
T  34636977 cttatccaaattggttcatacccaaagcacaagaacaatg 34636938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 23260026 - 23260106
Alignment:
Q  129 tcttcttcggtacctaaaatattagtgtaatgatcaatttccttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    ||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||| | |||||||    
T  23260026 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaagcacaagaacaatg 23260106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 23259947 - 23260025
Alignment:
Q  71 aaaacccaatttg-tctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaat 148  Q
    ||||||||||||  || ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  23259947 aaaacccaatttcatcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaat 23260025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 20559641 - 20559539
Alignment:
Q  113 caaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttccttatccaaattggttcatactcaaaacaccaaaacaatgtca 212  Q
    ||||||||| | ||| ||||||| | |||||||||| ||| ||||| | |||||||| ||||||||||||||||||||||||| ||| | ||||||| ||    
T  20559641 caaagcatacaccatgtcttctttgatacctaaaatgttactgtaagggtcaatttctttatccaaattggttcatactcaaagcacaagaacaatgcca 20559542  T
Q  213 taa 215  Q
    |||    
T  20559541 taa 20559539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 24164615 - 24164536
Alignment:
Q  137 ggtacctaaaatattagtgtaatga-tcaatttccttatccaaattggttcatactcaaaacaccaaaacaatgtcataa 215  Q
    |||||||||||| || |||||| |  |||||||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  24164615 ggtacctaaaatgttggtgtaaggggtcaatttccttatccaaattggttcatactcaaagcacaagaacaatgtcataa 24164536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 31275943 - 31275995
Alignment:
Q  164 aatttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||||||||||||||||||||||||| ||||||| | ||| ||||||||||    
T  31275943 aatttccttatccaaattggttcatacttaaaacacgagaaataatgtcataa 31275995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 11166045 - 11166089
Alignment:
Q  147 atattagtgtaatgatcaatttccttatccaaattggttcatact 191  Q
    |||||| ||||| | ||||||||| ||||||||||||||||||||    
T  11166045 atattaatgtaagggtcaatttccgtatccaaattggttcatact 11166089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 55163081 - 55162936
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    ||||||||||||||   |||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||| | |||||||||    
T  55163081 aaaacccaatttgttcgccgtacacacttcaagtaaaaacttcaaagcatagaccatctcttctttggtgcctaaaatgttagtgtaagggtcaatttcc 55162982  T
Q  171 ttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  55162981 ttatccaaattggttcatactcaaagcaccagaaacaatgtcataa 55162936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 70190 - 70066
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    ||||| |||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||| ||||||||| ||||||||||    
T  70190 aaaactcaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatgttagtgtaaggatcaatttc 70091  T
Q  170 cttatccaaattggttcatactcaa 194  Q
    |||||||||||||||||||||||||    
T  70090 cttatccaaattggttcatactcaa 70066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 40459841 - 40459702
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| || |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |||||| || | ||||||||    
T  40459841 aaaacccaatttcgtcccctgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttc 40459742  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||| ||| | |||||||    
T  40459741 cttatccaaattggttcatactcaaagcacaagaacaatg 40459702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 28968564 - 28968700
Alignment:
Q  80 tttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttccttatccaaa 179  Q
    |||||| |||||| |||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||| | ||||||||||||||||||    
T  28968564 tttgtcccccgtatgcacttcaagcaaaaacttcaaagcatagaccatcttttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaa 28968663  T
Q  180 ttggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||| ||||||||| ||| | ||||||| ||||||    
T  28968664 ttggttgatactcaaagcacaagaaacaatctcataa 28968700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 66 - 215
Target Start/End: Complemental strand, 49499951 - 49499801
Alignment:
Q  66 gatcgaaaacccaatttgtctcccgtacgcacttcaagt-aaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatca 164  Q
    |||| ||||| ||||||||| |||||||||||||||||  ||||||||||||||||||| |||||||||||  | ||||||||| ||||||||| | |||    
T  49499951 gatcaaaaactcaatttgtcccccgtacgcacttcaagcgaaaaacttcaaagcatagaccatctcttctttagcacctaaaatgttagtgtaagggtca 49499852  T
Q  165 atttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||||| |||||||||| || ||||| ||||||||||||||    
T  49499851 atttccttatccaaattagttcatactc-aagcaccagaaacaatgtcataa 49499801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 2761427 - 2761535
Alignment:
Q  89 cgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgt--aatgatcaatttccttatccaaattggttc 186  Q
    ||||||| ||||||| ||||||  ||||||||| | ||| ||||||| | ||||||||||||||||||  || | |||||||||||||||||||||||||    
T  2761427 cgtacgcgcttcaagcaaaaacaccaaagcatacaccatgtcttctttgatacctaaaatattagtgtgtaagggtcaatttccttatccaaattggttc 2761526  T
Q  187 atactcaaa 195  Q
    |||||||||    
T  2761527 atactcaaa 2761535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 10276862 - 10276814
Alignment:
Q  147 atattagtgtaatgatcaatttccttatccaaattggttcatactcaaa 195  Q
    |||||| ||||| | ||||||||||||| ||||||||||||||||||||    
T  10276862 atattaatgtaagggtcaatttccttatacaaattggttcatactcaaa 10276814  T

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Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 9104987 - 9104842
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||||||||||  |||||||||| ||||||||||||||||||| || |||||||||||    
T  9104987 aaaacccaatttgtcccccgtacgcacttcaagcagaaacttcaaagcatagacaatctcttctttggtacctaaaatattagtgcaaggatcaatttcc 9104888  T
Q  171 ttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||||||||||||| ||| | |||||||| |||||    
T  9104887 ttatccaaattggttcatactcaaagcacaagaaacaatgccataa 9104842  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 46403916 - 46404061
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||    
T  46403916 aaaacccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttc 46404015  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatgtcataa 215  Q
    |||||||||||||||||||||||||| ||| | ||||||| |||||    
T  46404016 cttatccaaattggttcatactcaaagcacaagaacaatgccataa 46404061  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 16976208 - 16976069
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    ||||| |||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||    
T  16976208 aaaactcaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttc 16976109  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  16976108 cttatccaaattggttcatactcaaaacacaagaacaatg 16976069  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 5004045 - 5004183
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |||||||| || |||||||||||| ||||||||| | ||||||||    
T  5004045 aaaacccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttatttggtacctaaaatgttagtgtaagggtcaatttc 5004144  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaat 208  Q
    |||||||||||||||||||||||||| ||| | ||||||    
T  5004145 cttatccaaattggttcatactcaaagcacaagaacaat 5004183  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 43277359 - 43277504
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    ||||||||| ||||  ||||||||||||||||| ||||||  ||||| ||||| |||||||||||  ||||||||||||||||||||| | |||||||||    
T  43277359 aaaacccaacttgttccccgtacgcacttcaagcaaaaacaccaaagtatagaccatctcttctttagtacctaaaatattagtgtaagggtcaatttcc 43277458  T
Q  171 ttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  43277459 ttatccaaattggttcatactcaaagcaccataaacaatgtcataa 43277504  T

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Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 209
Target Start/End: Original strand, 7336009 - 7336147
Alignment:
Q  72 aaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||||||||| | ||||||||||| | |||||||||| ||||||||| | |||||||||    
T  7336009 aaacccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcataaatcatctcttctttgttacctaaaatgttagtgtaagggtcaatttcc 7336108  T
Q  171 ttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    ||||||||||||||||||||||||| ||| | |||||||    
T  7336109 ttatccaaattggttcatactcaaagcacaagaacaatg 7336147  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 11937207 - 11937350
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    |||||||||||| |  |||| |||| ||||||| |||| |  ||||||||| | ||| ||||||| |||||||||||||||||||||| | |||||||||    
T  11937207 aaaacccaattttttccccgcacgcgcttcaagcaaaa-caccaaagcataca-catgtcttctttggtacctaaaatattagtgtaagggtcaatttcc 11937304  T
Q  171 ttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||||||| ||||| ||  | ||||||||||||||    
T  11937305 ttatccaaattggttcatattcaaagcataagaaacaatgtcataa 11937350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 17542113 - 17542166
Alignment:
Q  163 caatttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  17542113 caatttccttatccaaattagttcatactcaaagcaccataaacaatgtcataa 17542166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 5704729 - 5704681
Alignment:
Q  147 atattagtgtaatgatcaatttccttatccaaattggttcatactcaaa 195  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  5704729 atattaatgtaagggtcaatttccttatccaaattggttcatactcaaa 5704681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 8731541 - 8731487
Alignment:
Q  162 tcaatttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||| |||||    
T  8731541 tcaatttccttatccaaattggttcatactcaaagcacaagaaacaatgccataa 8731487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 9083428 - 9083374
Alignment:
Q  162 tcaatttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||| |||||    
T  9083428 tcaatttccttatccaaattggttcatactcaaagcacaagaaacaatgccataa 9083374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 1461556 - 1461523
Alignment:
Q  162 tcaatttccttatccaaattggttcatactcaaa 195  Q
    |||||||||||||||||||| |||||||||||||    
T  1461556 tcaatttccttatccaaattagttcatactcaaa 1461523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 1076 - 932
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||||||| || ||||||||||| ||||| |||||||||||||||| | |||||||||    
T  1076 aaaacccaatttgtcccccgtacacacttcaagaaaaaacttcaaagcatggaccatctcttctttggtacttaaaatattagtgtaagggtcaatttcc 977  T
Q  171 ttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  976 ttatccaaattggttcata-tcaaagcaccataaacaatgtcataa 932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 322 - 183
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||||||| | ||||||||||| | |||||||||| ||||||||| | ||||||||    
T  322 aaaacccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcataaatcatctcttctttgttacctaaaatgttagtgtaagggtcaatttc 223  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    ||||||||||||| |||||||||||| ||| | |||||||    
T  222 cttatccaaattgattcatactcaaagcacaagaacaatg 183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 1654 - 1793
Alignment:
Q  71 aaaacccaattt-gtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttc 169  Q
    |||||||||||| ||| |||||| ||||||| || ||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||| | ||||||||    
T  1654 aaaacccaatttcgtcccccgtatgcacttccagcaaaaacttcaaagtatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttc 1753  T
Q  170 cttatccaaattggttcatactcaaaacaccaaaacaatg 209  Q
    ||||||||||||||||||||| |||| ||| | |||||||    
T  1754 cttatccaaattggttcatacccaaagcacaagaacaatg 1793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 32664 - 32786
Alignment:
Q  71 aaaacccaatttgtctcccgtacgcacttcaagtaaaaacttcaaagcatagagcatctcttcttcggtacctaaaatattagtgtaatgatcaatttcc 170  Q
    |||| |||||||||| ||  ||||||||||||  ||||||||||||||||||| ||||||  ||| |||||||||||| ||||||||| | |||||||||    
T  32664 aaaatccaatttgtcccctatacgcacttcaacaaaaaacttcaaagcatagaccatctc--ctttggtacctaaaatgttagtgtaagggtcaatttcc 32761  T
Q  171 ttatccaaattggttcatactcaaa 195  Q
    |||||||||||||||||||||||||    
T  32762 ttatccaaattggttcatactcaaa 32786  T

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Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 11510 - 11454
Alignment:
Q  148 tattagtgtaatgatcaatttccttatccaaattggttcatactcaaaacaccaaaa 204  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||    
T  11510 tattaatgtaaggatcaatttccttatccaaattggttcatactcaaagcacaaaaa 11454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 2115 - 2163
Alignment:
Q  147 atattagtgtaatgatcaatttccttatccaaattggttcatactcaaa 195  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  2115 atattaatgtaagggtcaatttccttatccaaattggttcatactcaaa 2163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 356356 - 356403
Alignment:
Q  148 tattagtgtaatgatcaatttccttatccaaattggttcatactcaaa 195  Q
    ||||| ||||| | ||||||||||||| ||||||||||||||||||||    
T  356356 tattaatgtaagggtcaatttccttattcaaattggttcatactcaaa 356403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 242428 - 242508
Alignment:
Q  137 ggtacctaaaatattagtgtaatga-tcaatttccttatccaaattggttcatactcaaaacacca-aaacaatgtcataa 215  Q
    |||||||||||| || |||||| |  ||||||||||| | |||||||||||||||||||| ||| | ||||||||| ||||    
T  242428 ggtacctaaaatgttggtgtaaagggtcaatttccttgttcaaattggttcatactcaaagcacaagaaacaatgttataa 242508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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