View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_low_54 (Length: 291)
Name: NF1048_low_54
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 19109676 - 19109464
Alignment:
| Q |
14 |
atattatgctagctgaactttctctcatttcatgggctggtcatggctaaggatttgggttatatagagctaacttgttattcgaattctcttatttgca |
113 |
Q |
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| T |
19109676 |
atattatgctagctgaactttctgtcatttcatgggttggtcatggctaaggatttgggttatatagagctaacttgttattcgaattctcttatttgca |
19109577 |
T |
|
| Q |
114 |
tcaatcttcttaacggcccggttgagagataccatgtttatgcggtacaattgcttcttcaaagtaatattatggtttctcacactctcagagaggggaa |
213 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19109576 |
tcaatcttcttaatggccccgttgagagataccatgtttatgcggtacaattgcttcttcaaagtaatattatggtttctcacactctcagagaggggaa |
19109477 |
T |
|
| Q |
214 |
ccaatgcgtagat |
226 |
Q |
| |
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||||||||||||| |
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| T |
19109476 |
ccaatgcgtagat |
19109464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 36186208 - 36186251
Alignment:
| Q |
160 |
acaattgcttcttcaaagtaatattatggtttctcacactctca |
203 |
Q |
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| T |
36186208 |
acaattgcttcttcaaagtaatattacagtttctcacactctca |
36186251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 35009514 - 35009475
Alignment:
| Q |
160 |
acaattgcttcttcaaagtaatattatggtttctcacact |
199 |
Q |
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||||||| |||||||||||||||||| ||||||||||||| |
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| T |
35009514 |
acaattgtttcttcaaagtaatattacggtttctcacact |
35009475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 13601720 - 13601769
Alignment:
| Q |
177 |
gtaatattatggtttctcacactctcagagaggggaaccaatgcgtagat |
226 |
Q |
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||||||||| ||||||||| ||||||||||||||||| || |||| |||| |
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| T |
13601720 |
gtaatattacggtttctcatactctcagagaggggaagcagtgcgcagat |
13601769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 36185787 - 36185642
Alignment:
| Q |
14 |
atattatgctagctgaactttctctcattt--catgggctggtcatggctaaggatttgggttatatagagctaacttgttattcgaattctcttatttg |
111 |
Q |
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||||||||||||||||||||||| |||| | ||||| |||||||| || ||||||||||||||| ||| || ||||||||| |||||||| |||| |
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| T |
36185787 |
atattatgctagctgaactttctttcatatagcatggtttggtcatgactgaggatttgggttatacggagttagcttgttattatgattctcttgtttg |
36185688 |
T |
|
| Q |
112 |
catcaatcttcttaacggcccggttgagagataccatgtttatgcggt |
159 |
Q |
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||| |||||||||| ||||| ||| ||||||||||||||||||||| |
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| T |
36185687 |
catatatcttcttaatggccccgtt--gagataccatgtttatgcggt |
36185642 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 36185623 - 36185569
Alignment:
| Q |
160 |
acaattgcttcttcaaagtaatattatggtttctcacactctcagagaggggaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| | ||| |||||||||| |
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|
| T |
36185623 |
acaattgcttcttcaaagtaatattaaggtttctcacagtttcatagaggggaac |
36185569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 5903569 - 5903625
Alignment:
| Q |
164 |
ttgcttcttcaaagtaatattatggtttctcacactctcagagaggggaaccaatgc |
220 |
Q |
| |
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||||||||| ||| |||||||| | ||||||||||||| | |||||||||| ||||| |
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| T |
5903569 |
ttgcttctttaaaataatattacgatttctcacactcttaaagaggggaactaatgc |
5903625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 2385050 - 2384990
Alignment:
| Q |
225 |
ataatactattgatgcagttatacgacagaattttcataccgtttgctcaactgataacac |
285 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||| || || |||||||||| |
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|
| T |
2385050 |
ataatactattgatgccgttatacaacagaattttcataccgttcgcgcagctgataacac |
2384990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 21377570 - 21377653
Alignment:
| Q |
14 |
atattatgctagctgaactttctctcattt--catgggctggtcatggctaaggatttgggttatatagagctaacttgttatt |
95 |
Q |
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| T |
21377570 |
atattatgctagctgaattttctgccatttatcatggtctggtcatggctaatgatttgggttattcagaactagcttgttatt |
21377653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 18888999 - 18888946
Alignment:
| Q |
164 |
ttgcttcttcaaagtaatattatggtttctcacactctcagagaggggaaccaa |
217 |
Q |
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|||||||||||||||||||| | ||||||||| || || ||||| ||||||||| |
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|
| T |
18888999 |
ttgcttcttcaaagtaatatcacggtttctcatacgcttagagatgggaaccaa |
18888946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 9635526 - 9635477
Alignment:
| Q |
177 |
gtaatattatggtttctcacactctcagagaggggaaccaatgcgtagat |
226 |
Q |
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||||||||| ||||||||| ||||||||||||||||| || |||| |||| |
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| T |
9635526 |
gtaatattacggtttctcatactctcagagaggggaagcagtgcgcagat |
9635477 |
T |
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