View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_low_56 (Length: 290)
Name: NF1048_low_56
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 85 - 269
Target Start/End: Complemental strand, 52153209 - 52153025
Alignment:
| Q |
85 |
tttggcattcaactatttgggtcgcggtttttgagtgtttaaggaaggctggtgttgggttggcaggttggtgtgtttctgcaggggtgttctttcaagc |
184 |
Q |
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| T |
52153209 |
tttggcattcaactatttgggtcgcggtttttgagtgtttaagggaggctggtgttgggttggcaggttggtgtgtttctgcaggggtgttctttcaagc |
52153110 |
T |
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| Q |
185 |
tgctgcctggtgtagtttggagttatcaatgccttgtttttatgccgtagagagtctggcgtgggttctgtagttggccgattct |
269 |
Q |
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| T |
52153109 |
tgctgcctggtgtagtttggagttatcaatgccttgtttttatgccgtagagagtctggcgtgggttctgtagttggccgattct |
52153025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 7831932 - 7831869
Alignment:
| Q |
30 |
tcaggatccaaatactctacattacttgagcttgaagcttcctctacagaacaattttggcatt |
93 |
Q |
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| T |
7831932 |
tcaggatccaaatactctacattacttgagcttgaagcttcctctacagaacaattttggcatt |
7831869 |
T |
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