View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1048_low_6 (Length: 712)

Name: NF1048_low_6
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1048_low_6
NF1048_low_6
[»] chr6 (2 HSPs)
chr6 (3-712)||(2384990-2385687)
chr6 (478-541)||(2385683-2385747)


Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 3 - 712
Target Start/End: Original strand, 2384990 - 2385687
Alignment:
Q  3 gtgttatcagttgagcaaacggtatgaaaattctgtcgtataacggcatcaatagtataatggacaaggttatagcactttggagtgtggcgggtggtat 102  Q
    |||||||||| || || ||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  2384990 gtgttatcagctgcgcgaacggtatgaaaattctgttgtataacggcatcaatagtattatagacaatgttatagcactttggagtgtggcgggtggtat 2385089  T
Q  103 cttgaaatttgaacctatgtttcgcttcattgtcatgccttgttttgtgaaaaatgttgcaggttgttggaaaatcactgcaaacatgagaagcattgtc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2385090 cttgaaatttgaacctatgtttcgcttcattgtcatgccttgttttgtgaaaaatgttgcaggttgttggaaaatcactgcaaacatgagaagcattgtc 2385189  T
Q  203 catataggcaatagcttgatcataaccttgacatttggtagcagacacatgctgattttagaatccttatttatgaccttaatgctttcgcagttttcgc 302  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||     
T  2385190 catataggcaatagcttaatcataaccttgacatttggtagcagacacatgctgactttagaatccttatttatgaccttaatgctttcacagttttcgt 2385289  T
Q  303 gacaaagtggtcgctcttgaagcctgtttcacaagaaaaataaatggttttctgtaagcacttcactataggtcattttaagtctcataacgggtaca-t 401  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||||| ||| |||||      
T  2385290 gacagagtggtcgctcttgaagcctgtttcacaagaaaaataaatgtgtttctgttagcacttccctataggtcattttaagtctcattacgcgtacacc 2385389  T
Q  402 gtaaccatttttcacacattctcttaccaaaatacacaggtcttgttatgttacttacttgacagtaaccgagttggtcacttatcctatgcataccgat 501  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||   ||||| ||||||||||||||||||||||||| | |    
T  2385390 gtaaccatttttctcacattctcttaccaaaatacacaggtcttgttatgttactaacgtga---taaccaagttggtcacttatcctatgcatactggt 2385486  T
Q  502 ttctcatctcatacgtgtaatcttgtccatttcagaattaggtaatcttgtccatttcaatatggcgaaaacattgagggagggagaagaggaataggct 601  Q
    |||||||||||||||||||||||||||| |||||||||||||| |            |||| ||||||||||| |||| ||| |||||||||||||||||    
T  2385487 ttctcatctcatacgtgtaatcttgtccttttcagaattaggtta----------aacaatgtggcgaaaacagtgagcgagagagaagaggaataggct 2385576  T
Q  602 gcacagccctagaggtaatcgtcatccaatgtacgaaaatctcacagggaaattccctcaattcctctattctctgtcgcacatt-tttcccctaaatcg 700  Q
    |   || |||||||| |||||||||||||| |||| |||| ||| |||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||    
T  2385577 gtgtag-cctagagggaatcgtcatccaatttacggaaatttcagagggaaattccctcgattcctctattctctctcgcacattattttccctaaatcg 2385675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 541
Target Start/End: Complemental strand, 2385747 - 2385683
Alignment:
Q  478 gtcacttatcctatgcataccgatttctcatctcatacgtgta-atcttgtccatttcagaatta 541  Q
    |||||||||||||||| || | ||||  ||||||||||||||| ||||||||| |||||||||||    
T  2385747 gtcacttatcctatgcgtaacaattttccatctcatacgtgtacatcttgtccgtttcagaatta 2385683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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