View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1048_low_62 (Length: 265)

Name: NF1048_low_62
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1048_low_62
NF1048_low_62
[»] chr8 (18 HSPs)
chr8 (1-152)||(40118088-40118239)
chr8 (5-168)||(38172754-38172924)
chr8 (25-133)||(13541421-13541530)
chr8 (25-133)||(13682943-13683052)
chr8 (25-164)||(38699721-38699860)
chr8 (49-163)||(18881850-18881965)
chr8 (25-164)||(43115191-43115330)
chr8 (25-112)||(4072236-4072323)
chr8 (25-112)||(41323190-41323277)
chr8 (25-112)||(21441602-21441689)
chr8 (25-160)||(41570409-41570544)
chr8 (57-167)||(12491566-12491678)
chr8 (201-255)||(38172699-38172753)
chr8 (49-163)||(1233564-1233675)
chr8 (49-163)||(13640920-13641031)
chr8 (3-61)||(6115005-6115065)
chr8 (35-64)||(18881806-18881835)
chr8 (65-102)||(33613707-33613744)
[»] chr7 (19 HSPs)
chr7 (12-167)||(34659348-34659505)
chr7 (25-162)||(758879-759016)
chr7 (25-142)||(37202791-37202909)
chr7 (25-162)||(46211636-46211773)
chr7 (3-164)||(29715802-29715965)
chr7 (25-164)||(48609062-48609201)
chr7 (25-112)||(39719929-39720016)
chr7 (57-167)||(13465458-13465570)
chr7 (57-167)||(28491315-28491427)
chr7 (25-162)||(83590-83728)
chr7 (3-61)||(14046987-14047046)
chr7 (3-61)||(14357017-14357076)
chr7 (49-162)||(20926818-20926929)
chr7 (3-61)||(25592101-25592161)
chr7 (93-164)||(25592168-25592240)
chr7 (108-167)||(14047068-14047127)
chr7 (108-167)||(14357098-14357157)
chr7 (90-164)||(37049140-37049214)
chr7 (57-142)||(25439574-25439658)
[»] chr4 (15 HSPs)
chr4 (5-167)||(52628240-52628409)
chr4 (2-133)||(54165954-54166088)
chr4 (25-133)||(8745701-8745810)
chr4 (3-163)||(21790718-21790882)
chr4 (25-112)||(43892531-43892618)
chr4 (25-133)||(48841154-48841261)
chr4 (57-164)||(6016799-6016907)
chr4 (25-164)||(48861977-48862116)
chr4 (57-163)||(2407155-2407263)
chr4 (57-164)||(22786028-22786136)
chr4 (201-255)||(52628411-52628465)
chr4 (201-255)||(54165869-54165923)
chr4 (5-163)||(17815943-17816098)
chr4 (87-160)||(42318962-42319035)
chr4 (210-265)||(11950664-11950720)
[»] chr5 (11 HSPs)
chr5 (3-164)||(16908611-16908773)
chr5 (25-133)||(34034073-34034182)
chr5 (25-164)||(17695867-17696006)
chr5 (5-113)||(19948859-19948967)
chr5 (25-112)||(13517548-13517635)
chr5 (25-112)||(17768985-17769072)
chr5 (25-163)||(41640026-41640164)
chr5 (8-71)||(22099209-22099273)
chr5 (57-164)||(40528147-40528255)
chr5 (3-163)||(40360995-40361156)
chr5 (49-161)||(14521642-14521753)
[»] scaffold0186 (1 HSPs)
scaffold0186 (2-163)||(22669-22833)
[»] scaffold0002 (1 HSPs)
scaffold0002 (3-151)||(428333-428482)
[»] chr1 (18 HSPs)
chr1 (25-164)||(11142660-11142799)
chr1 (25-112)||(1600595-1600682)
chr1 (3-164)||(10406145-10406306)
chr1 (25-133)||(44961438-44961547)
chr1 (25-164)||(19313369-19313508)
chr1 (25-163)||(10177885-10178023)
chr1 (25-112)||(15757726-15757813)
chr1 (68-168)||(33240845-33240946)
chr1 (57-167)||(30950794-30950906)
chr1 (25-112)||(10620113-10620200)
chr1 (25-164)||(23614619-23614758)
chr1 (3-60)||(33241370-33241428)
chr1 (4-113)||(47367825-47367937)
chr1 (57-164)||(29799042-29799150)
chr1 (49-163)||(46515604-46515716)
chr1 (49-162)||(21972427-21972538)
chr1 (3-72)||(52111063-52111132)
chr1 (74-160)||(28403123-28403210)
[»] chr6 (11 HSPs)
chr6 (25-162)||(29363504-29363641)
chr6 (3-159)||(29486420-29486577)
chr6 (57-167)||(1780628-1780740)
chr6 (25-102)||(34729825-34729902)
chr6 (35-140)||(24428798-24428907)
chr6 (3-61)||(22956511-22956571)
chr6 (3-61)||(23831821-23831881)
chr6 (49-162)||(904013-904124)
chr6 (93-164)||(22956432-22956504)
chr6 (93-164)||(23831888-23831960)
chr6 (49-163)||(8559901-8560013)
[»] scaffold0110 (1 HSPs)
scaffold0110 (6-112)||(6920-7028)
[»] chr3 (15 HSPs)
chr3 (25-164)||(17652944-17653083)
chr3 (25-112)||(21295982-21296069)
chr3 (25-112)||(46823854-46823941)
chr3 (57-167)||(40763813-40763925)
chr3 (25-164)||(16152280-16152419)
chr3 (27-163)||(29648391-29648530)
chr3 (57-167)||(3458062-3458173)
chr3 (57-164)||(20843176-20843284)
chr3 (25-93)||(11027911-11027979)
chr3 (3-61)||(11906662-11906721)
chr3 (49-163)||(35106481-35106593)
chr3 (3-61)||(38171407-38171466)
chr3 (3-61)||(52403345-52403404)
chr3 (93-164)||(52403266-52403338)
chr3 (49-163)||(19795621-19795732)
[»] chr2 (9 HSPs)
chr2 (35-141)||(42799168-42799275)
chr2 (3-163)||(4435218-4435380)
chr2 (57-167)||(16546354-16546466)
chr2 (57-167)||(39070180-39070292)
chr2 (57-164)||(45655935-45656043)
chr2 (26-85)||(38881702-38881761)
chr2 (25-73)||(26180642-26180690)
chr2 (57-142)||(37614591-37614680)
chr2 (8-52)||(31106814-31106858)
[»] scaffold0005 (1 HSPs)
scaffold0005 (25-164)||(292225-292364)
[»] scaffold0481 (1 HSPs)
scaffold0481 (25-128)||(6672-6773)
[»] scaffold1554 (1 HSPs)
scaffold1554 (25-59)||(778-812)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 40118088 - 40118239
Alignment:
Q  1 attcaataacaattatagaaaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatcta 100  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40118088 attcaataacaattatagaaaactttttcaacaataaaaattatcaagataatagtcataaacaaattaaatggacaatgaatttattgcaaataatcta 40118187  T
Q  101 ttagtttacattgaaaatatattattaatctatctagtaaacactcaattat 152  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40118188 ttagtttacattgaaaatatattattaatctacctagtaaacactcaattat 40118239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 38172924 - 38172754
Alignment:
Q  5 aataacaattatagaaaaaatttt--caacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctatt 102  Q
    ||||||||||||||| |||| |||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  38172924 aataacaattatagagaaaactttgtcaacaataaaaattatcaagacaatagtcataaacaaattaaatgaacaatgagtttattgcaaataacctatt 38172825  T
Q  103 agtttacatt-gaaaatatattattaatc----tatctagtaaacactcaattatagataaaattggtttt 168  Q
    |||||||||| || |||| ||||||||||    ||| |||||||||||||||||| |||||||||||||||    
T  38172824 agtttacattggagaatacattattaatctatatatttagtaaacactcaattatggataaaattggtttt 38172754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 13541530 - 13541421
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||  |||||| ||||||| |||||    
T  13541530 ttttcaacaataaaaattatcaagacaatagtcatagataaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagatatt 13541431  T
Q  124 attaatctat 133  Q
    ||||||||||    
T  13541430 attaatctat 13541421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 13682943 - 13683052
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||  |||||| ||||||| |||||    
T  13682943 ttttcaacaataaaaattatcaagacaatagtcatagataaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagatatt 13683042  T
Q  124 attaatctat 133  Q
    ||||||||||    
T  13683043 attaatctat 13683052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 38699860 - 38699721
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| | ||||||| |||||||||| |||||  |||||| ||||||| | |||    
T  38699860 ttttcaacaataaaaattatcaagacaatagtcatggacaaattaaatggagagtgagtttcttgcaaataacctatttatttacatttgaaaagacatt 38699761  T
Q  124 attaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || |||||| || ||||| ||| |||||||    
T  38699760 attaatctat-tattaaacagtctattattgatgaaattgg 38699721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 18881850 - 18881965
Alignment:
Q  49 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactca 147  Q
    |||||||||||||||| ||||||||| |||||||||| |||||||||| ||||| ||||||||| ||||| | ||||||||||||| | ||||||| |||    
T  18881850 acaatagtcataaacatattaaatgggcaatgagtttcttgcaaataacctatttgtttacattggaaaaaacattattaatctattttgtaaacaatca 18881949  T
Q  148 attatagataaaattg 163  Q
    ||||| ||||||||||    
T  18881950 attatggataaaattg 18881965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 43115191 - 43115330
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    |||||||||||||||||||||||||||||||||||  | ||| |||||||||| ||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  43115191 ttttcaacaataaaaattatcaagacaatagtcattgaaaaactaaatggacagtgagtttcttgcaaataacatatttatttacatttgaaaaaacatt 43115290  T
Q  124 attaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || |||||| |||||||| ||| |||||||    
T  43115291 attaatctat-tattaaacagtcaattattgatgaaattgg 43115330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 4072323 - 4072236
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  4072323 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 4072236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 41323277 - 41323190
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  41323277 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataaactatttatttacatt 41323190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 21441689 - 21441602
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  21441689 ttttcaacaataaaaatgatcaaaacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 21441602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 41570409 - 41570544
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatatta 124  Q
    ||||||||||||| ||||||||||  |||||||||||||| ||||||||   ||||||||| |||||||||| ||||| |||||| || |||| | |  |    
T  41570409 ttttcaacaataacaattatcaagtaaatagtcataaacatattaaatgagtaatgagtttcttgcaaataacctatttgtttaccttaaaaaaacaaca 41570508  T
Q  125 ttaatctatctagtaaacactcaattatagataaaa 160  Q
    ||||||||| | ||||||| |||||||| |||||||    
T  41570509 ttaatctattttgtaaacaatcaattatggataaaa 41570544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 12491566 - 12491678
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 154  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  12491566 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 12491665  T
Q  155 ataaaattggttt 167  Q
    ||| |||||||||    
T  12491666 atacaattggttt 12491678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 38172753 - 38172699
Alignment:
Q  201 ttgaaatgtattttgtcgaacttttctaatagctatcgtcaatttttatcctttg 255  Q
    |||||||| || ||||| || ||||||||||||||| ||||||||||||||||||    
T  38172753 ttgaaatgcatcttgtccaaattttctaatagctattgtcaatttttatcctttg 38172699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 1233675 - 1233564
Alignment:
Q  49 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 148  Q
    |||||||| | ||||||||||||| || ||| ||||  || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  1233675 acaatagtgagaaacaaattaaatagataataagttc-ttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 1233579  T
Q  149 ttatagataaaattg 163  Q
    |||| ||||||||||    
T  1233578 ttatggataaaattg 1233564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 13641031 - 13640920
Alignment:
Q  49 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 148  Q
    |||||||| | ||||||||||||| || ||| ||||  || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  13641031 acaatagtgagaaacaaattaaatagataataagttc-ttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 13640935  T
Q  149 ttatagataaaattg 163  Q
    |||| ||||||||||    
T  13640934 ttatggataaaattg 13640920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 6115065 - 6115005
Alignment:
Q  3 tcaataacaattatagaaaaaa--ttttcaacaataaaaattatcaagacaatagtcataa 61  Q
    ||||||||||||||||| | ||  |||| ||||||||||| |||||||||| |||||||||    
T  6115065 tcaataacaattatagagagaacttttttaacaataaaaactatcaagacagtagtcataa 6115005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 18881806 - 18881835
Alignment:
Q  35 taaaaattatcaagacaatagtcataaaca 64  Q
    ||||||||||||||||||||||||||||||    
T  18881806 taaaaattatcaagacaatagtcataaaca 18881835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 33613707 - 33613744
Alignment:
Q  65 aattaaatggacaatgagtttattgcaaataatctatt 102  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  33613707 aattaaatggacaatgagtttcttgcaaataacctatt 33613744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 34659348 - 34659505
Alignment:
Q  12 attatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca 110  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  34659348 attatagagaaaacttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggataatgagtttattgcaaataacttattagtttaca 34659447  T
Q  111 -ttgaaaatatattattaatctatctagtaaacactcaattatagataaaattggttt 167  Q
     || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  34659448 tttaaaaatacattattaatctatttagtaaacactcaattatagataaaattggttt 34659505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 758879 - 759016
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||  |||||| ||||||| | |||    
T  758879 ttttcaataataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataatctatttatttacatttgaaaagacatt 758978  T
Q  124 attaatctatctagtaaacactcaattatagataaaatt 162  Q
    |||||||||| || ||||||  ||||||| ||| |||||    
T  758979 attaatctat-tattaaacaaacaattattgatgaaatt 759016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 37202791 - 37202909
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacat-tgaaaatatatt 123  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||  ||||| | |||    
T  37202791 ttttcaacattaaaagttattaagacaatagtcataaacaaattaaatggacattcagtttcttgcaaataatctatttgtttacatcagaaaaaacatt 37202890  T
Q  124 attaatctatctagtaaac 142  Q
    |||||||||| ||||||||    
T  37202891 attaatctatttagtaaac 37202909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 46211773 - 46211636
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  |||||| ||||||| | |||    
T  46211773 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatt 46211674  T
Q  124 attaatctatctagtaaacactcaattatagataaaatt 162  Q
    |||||||||| || ||||||  ||||||| ||| |||||    
T  46211673 attaatctat-tattaaacaaacaattattgatgaaatt 46211636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 29715965 - 29715802
Alignment:
Q  3 tcaataacaattatagaaaaaatttt--caacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatcta 100  Q
    ||||||||||  ||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| ||| |||||| |||    
T  29715965 tcaataacaacaatagaaaaacttttttcaacaataaaaattatcaagacaatagtcatagacaaattaaatggacggtgagtttcttgtaaataaccta 29715866  T
Q  101 ttagtttaca-ttgaaaatatattattaatctatctagtaaacactcaattatagataaaattgg 164  Q
    ||  |||||| ||||||| | ||||||||||||| || |||||| || ||||| ||| |||||||    
T  29715865 tttatttacatttgaaaagacattattaatctat-tattaaacagtctattattgatgaaattgg 29715802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 48609201 - 48609062
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  || ||| ||||||| | |||    
T  48609201 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttattaacatttgaaaacacatt 48609102  T
Q  124 attaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  48609101 attaatctat-tattaaacaaacaattattgatgaaattgg 48609062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 39719929 - 39720016
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  39719929 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 39720016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 13465458 - 13465570
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 154  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  13465458 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 13465557  T
Q  155 ataaaattggttt 167  Q
    |||||||||||||    
T  13465558 ataaaattggttt 13465570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 28491315 - 28491427
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatcta-ttagtttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 154  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||| ||| |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  28491315 cataaacaaattaaatggacattgagtttcttgcaaataacctatttattttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 28491414  T
Q  155 ataaaattggttt 167  Q
    |||||||||||||    
T  28491415 ataaaattggttt 28491427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 83728 - 83590
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatgg-acaatgagtttattgcaaataatctattagtttaca-ttgaaaatatat 122  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||    ||||||||||| ||| |||||| |||||  |||||| ||||||| | ||    
T  83728 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaaacatacaatgagtttcttgtaaataacctatttatttacatttgaaaagacat 83629  T
Q  123 tattaatctatctagtaaacactcaattatagataaaatt 162  Q
    ||||||||||| || ||||||  ||||||| ||| |||||    
T  83628 tattaatctat-tattaaacaaacaattattgatgaaatt 83590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 14046987 - 14047046
Alignment:
Q  3 tcaataacaattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataa 61  Q
    |||||||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||    
T  14046987 tcaataacaattatagaaaagacttttcaacaataaaaactattaagacaatagtcataa 14047046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 14357017 - 14357076
Alignment:
Q  3 tcaataacaattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataa 61  Q
    |||||||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||    
T  14357017 tcaataacaattatagaaaagacttttcaacaataaaaactattaagacaatagtcataa 14357076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 20926929 - 20926818
Alignment:
Q  49 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 148  Q
    ||||||||||||| ||||||||| ||||||| ||||| ||  ||||||  | || ||||||||| |||| | |||| |||||||| || |||||| ||||    
T  20926929 acaatagtcataatcaaattaaaaggacaataagttt-ttcaaaataacttgtttgtttacatt-aaaaaacattaataatctatttattaaacagtcaa 20926832  T
Q  149 ttatagataaaatt 162  Q
    |||| |||||||||    
T  20926831 ttatggataaaatt 20926818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 25592101 - 25592161
Alignment:
Q  3 tcaataacaattatagaaaaaa--ttttcaacaataaaaattatcaagacaatagtcataa 61  Q
    ||||||||||||||||| | ||  |||||||||||||||| |||||||| |||||||||||    
T  25592101 tcaataacaattatagagagaactttttcaacaataaaaactatcaagataatagtcataa 25592161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 25592168 - 25592240
Alignment:
Q  93 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  25592168 ataatctatttgtgtacattgcaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 25592240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 14047068 - 14047127
Alignment:
Q  108 acattgaaaatatattattaatctatctagtaaacactcaattatagataaaattggttt 167  Q
    |||||||||||||||||||||||||| | ||||| | ||| |||| | ||||||||||||    
T  14047068 acattgaaaatatattattaatctattttgtaaatagtcatttatggctaaaattggttt 14047127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 14357098 - 14357157
Alignment:
Q  108 acattgaaaatatattattaatctatctagtaaacactcaattatagataaaattggttt 167  Q
    |||||||||||||||||||||||||| | ||||| | ||| |||| | ||||||||||||    
T  14357098 acattgaaaatatattattaatctattttgtaaatagtcatttatggctaaaattggttt 14357157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 37049140 - 37049214
Alignment:
Q  90 caaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaattatagataaaattgg 164  Q
    ||||||| ||||| |||||||||||||| | ||||||||||| | || |||||| | ||||| | ||||||||||    
T  37049140 caaataacctatttgtttacattgaaaagacattattaatctttttattaaacagttaattacaaataaaattgg 37049214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 25439658 - 25439574
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaac 142  Q
    ||||||||||||||||||||| ||||||| |||||   || ||||| | |||||||| ||||| | ||||||||||||| ||||||||    
T  25439658 cataaacaaattaaatggacattgagtttcttgca---aacctatttgttttacattggaaaagacattattaatctatttagtaaac 25439574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 52628240 - 52628409
Alignment:
Q  5 aataacaattatagaaaaaatttt--caacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctatt 102  Q
    ||||||||||||||| |||| |||  |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  52628240 aataacaattatagagaaaactttgtcaacaataaaaattatcaagacaatagtcataaataaattaaatgaacaatgagtttattgcaaataacctatt 52628339  T
Q  103 agtttacatt-gaaaatatattattaatc----tatctagtaaacactcaattatagataaaattggttt 167  Q
    |||||||||| ||||||||||||||||||    ||| ||||||||||||||||||  |||||| ||||||    
T  52628340 agtttacattggaaaatatattattaatctatatatttagtaaacactcaattatttataaaactggttt 52628409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 54166088 - 54165954
Alignment:
Q  2 ttcaataacaattatagaaaaaa--ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatct 99  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||    
T  54166088 ttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaataaattaaatggacaatgagtttattgcaaataacct 54165989  T
Q  100 attagtttacattg-aaaatatattattaatctat 133  Q
    |||||||||||||| |||||| |||||||||||||    
T  54165988 attagtttacattgaaaaatacattattaatctat 54165954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 8745810 - 8745701
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| || | ||||| |||||  |||||| ||||||| | |||    
T  8745810 ttttcaacaataaaaattatcaagacaatattcatagacaaattaaatggacaatgagtttcttacgaataacctatttatttacatttgaaaagacatt 8745711  T
Q  124 attaatctat 133  Q
    ||||||||||    
T  8745710 attaatctat 8745701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 21790718 - 21790882
Alignment:
Q  3 tcaataacaattatagaaaaaa--ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgag--tttattgcaaataatc 98  Q
    |||||| |||||||||| ||||  |||| |||  |||||||||| ||||| |||||||||||||||| ||||||||||||||  ||| |||||||||| |    
T  21790718 tcaatagcaattatagagaaaactttttaaacggtaaaaattattaagactatagtcataaacaaataaaatggacaatgagttttttttgcaaataacc 21790817  T
Q  99 tattagtttacattgaaaatatattattaatctatctagtaaacactcaattatagataaaattg 163  Q
    ||||  ||||| | ||||| | ||||||||||||  ||||||||| |||||||| || |||||||    
T  21790818 tatttatttacttggaaaagacattattaatctagttagtaaacaatcaattatggacaaaattg 21790882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 43892618 - 43892531
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||  |||||||||| |||||||||| |||||  ||||||||    
T  43892618 ttttcaacaataaaaataatcaagacaatagtcatagacaaattaaatgtgcaatgagtttcttgcaaataacctatttatttacatt 43892531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 48841154 - 48841261
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||| |||| |||| |||||||||| |||||  |||||| ||||||| | |||    
T  48841154 ttttcaacaataaaaattatcaagacaa--gtcatagacaaattaaatggataatgggtttcttgcaaataacctatttatttacatttgaaaagacatt 48841251  T
Q  124 attaatctat 133  Q
    ||||||||||    
T  48841252 attaatctat 48841261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 6016907 - 6016799
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattataga 155  Q
    ||||||||| ||||||| ||| ||||||| |||||||||| ||||| |||||||||| |||| | ||||||||||||| ||||||||  |||||||| ||    
T  6016907 cataaacaatttaaatgtacattgagtttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgga 6016808  T
Q  156 taaaattgg 164  Q
    |||||||||    
T  6016807 taaaattgg 6016799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 48861977 - 48862116
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatat-att 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||||||  |||||||||||| ||||||||||  ||||  |||||||| ||||  | |||    
T  48861977 ttttcaacaacaaaaattatcaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcatt 48862076  T
Q  124 attaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  48862077 attaatctat-tattaaacagacaattattgatgaaattgg 48862116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 2407155 - 2407263
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg--aaaatatattattaatctatctagtaaacactcaattatag 154  Q
    ||||||||| ||||||||||| ||| ||| |||||||||| ||||| ||||||||||  |||| | ||||||||||||| ||||||||  |||||||| |    
T  2407155 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaaagacattattaatctatttagtaaacggtcaattattg 2407254  T
Q  155 ataaaattg 163  Q
    |||||||||    
T  2407255 ataaaattg 2407263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 22786028 - 22786136
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactcaattataga 155  Q
    ||||||||| ||||||||||| ||| ||| |||||||||| ||||| ||||||||| ||||| | ||||||||||||| ||||||||  || ||||| ||    
T  22786028 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaacggtcgattatgga 22786127  T
Q  156 taaaattgg 164  Q
    |||||||||    
T  22786128 taaaattgg 22786136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 52628411 - 52628465
Alignment:
Q  201 ttgaaatgtattttgtcgaacttttctaatagctatcgtcaatttttatcctttg 255  Q
    |||||||| || ||||| || ||||||||||||||| ||||||||||||||||||    
T  52628411 ttgaaatgcatcttgtccaaattttctaatagctattgtcaatttttatcctttg 52628465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 54165923 - 54165869
Alignment:
Q  201 ttgaaatgtattttgtcgaacttttctaatagctatcgtcaatttttatcctttg 255  Q
    |||||||  |||||||| ||||||||||||| |||| ||||||||||||||||||    
T  54165923 ttgaaatacattttgtccaacttttctaataactattgtcaatttttatcctttg 54165869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 17816098 - 17815943
Alignment:
Q  5 aataacaattatagaaaaaattt--tcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaa-taat---c 98  Q
    |||||||| |||||| |||| ||  |||||||||||||||||||||||| ||||         ||| ||||| |||||||||| ||||||| |||    |    
T  17816098 aataacaactatagagaaaacttattcaacaataaaaattatcaagacagtagt---------attcaatgggcaatgagtttcttgcaaaataacttac 17816008  T
Q  99 tattagtttacattgaaaatatattattaatctatctagtaaacactcaattatagataaaattg 163  Q
    |||| ||||||||| |||| | ||||||||||||| | ||||||| |||| ||| ||||||||||    
T  17816007 tatttgtttacattaaaaaaacattattaatctattttgtaaacaatcaactatggataaaattg 17815943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 42319035 - 42318962
Alignment:
Q  87 ttgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaattatagataaaa 160  Q
    ||||||||||  ||||  ||||||||||||  ||||||||||||||| |||||||||   |||||| |||||||    
T  42319035 ttgcaaataacatatttatttacattgaaaggatattattaatctatttagtaaacataaaattatggataaaa 42318962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 11950664 - 11950720
Alignment:
Q  210 attttgtcgaacttttctaa-tagctatcgtcaatttttatcctttgctactactct 265  Q
    |||||||| ||||||||||| ||||||| ||||||||||||| |||| |||| ||||    
T  11950664 attttgtccaacttttctaaatagctattgtcaatttttatcatttgttactgctct 11950720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 16908773 - 16908611
Alignment:
Q  3 tcaataacaattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctat 101  Q
    ||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||| ||||| || ||| ||| ||||    
T  16908773 tcaataacaattatagagaaaacttttcaacgataaaaattattaagacaatagttataaataaattaaatggacaat-agtttctttcaagtaacctat 16908675  T
Q  102 tagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 164  Q
    | |||||||||| |||||| ||||||||||||| ||||||||| |||||||| |||||| ||||    
T  16908674 ttgtttacattgaaaaatacattattaatctatttagtaaacagtcaattatggataaatttgg 16908611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 34034073 - 34034182
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  34034073 ttttcaacaataaaaattatcaagagaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacttatttatttacatttgaaaagacatt 34034172  T
Q  124 attaatctat 133  Q
    ||||||||||    
T  34034173 attaatctat 34034182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 17696006 - 17695867
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  17696006 ttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacagtgagtttcttgcaaataacttatttatttacatttgaaaaaacatt 17695907  T
Q  124 attaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || |||||| |||||||| ||| |||||||    
T  17695906 attaatctat-tattaaacagtcaattattgatgaaattgg 17695867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 19948967 - 19948859
Alignment:
Q  5 aataacaattatagaaaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattag 104  Q
    |||||||| |||||||||||   | |||||| |||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||| | |    
T  19948967 aataacaactatagaaaaaaaaattaacaattaaaattatcaagacaatagtcataaacctattaaatggacaatgaatttcttgcaaataatctagttg 19948868  T
Q  105 tttacattg 113  Q
    |||||||||    
T  19948867 tttacattg 19948859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 13517548 - 13517635
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  13517548 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 13517635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 17769072 - 17768985
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  17769072 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 17768985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 41640164 - 41640026
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  41640164 ttttcaacaataaaaatgatcaagaaaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacatatttatttacatttgaaaagacatt 41640065  T
Q  124 attaatctatctagtaaacactcaattatagataaaattg 163  Q
    |||||||||| || ||||||  ||||||| ||| ||||||    
T  41640064 attaatctat-tattaaacaagcaattattgatgaaattg 41640026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 22099209 - 22099273
Alignment:
Q  8 aacaattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaa 71  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  22099209 aacaattatagagaaaacttttcaacaataaaagttatcaagacaatagtcataatcaaattaaa 22099273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 40528255 - 40528147
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattataga 155  Q
    |||||||||||||| |||| | ||||||| || ||||||| ||||| |||||||||| |||| | |||||||||| || ||||||||  |||| ||||||    
T  40528255 cataaacaaattaagtggatattgagtttcttacaaataacctatttgtttacattgaaaaagacattattaatcaatttagtaaacgatcaaatataga 40528156  T
Q  156 taaaattgg 164  Q
    |||||||||    
T  40528155 taaaattgg 40528147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 40361156 - 40360995
Alignment:
Q  3 tcaataacaattatagaaaaaa--ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatcta 100  Q
    |||| |||| ||||||| ||||  |||||||||| |||||||||||| | ||||||||   |||  |||||| |  ||||||||| |||||||||| |||    
T  40361156 tcaacaacatttatagagaaaactttttcaacaacaaaaattatcaacaaaatagtcagggaca--ttaaataggaaatgagtttcttgcaaataaccta 40361059  T
Q  101 ttagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattg 163  Q
    || ||||| ||   |||| | ||||||||||||| | ||||||| |||||||| ||||||||||    
T  40361058 tttgtttagatcataaaagacattattaatctattttgtaaacagtcaattatggataaaattg 40360995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 14521642 - 14521753
Alignment:
Q  49 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 148  Q
    |||||||| |||||||||||||| | ||||| ||||  ||||||||||  | || |||||||||||||| | |||| |||| ||| || |||||| ||||    
T  14521642 acaatagttataaacaaattaaaagtacaataagttg-ttgcaaataacttgtttgtttacattgaaaaaacattaataatatatttattaaacagtcaa 14521740  T
Q  149 ttatagataaaat 161  Q
    |||| ||||||||    
T  14521741 ttatggataaaat 14521753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 22669 - 22833
Alignment:
Q  2 ttcaataacaattatagaaaaaa--ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatct 99  Q
    |||||||||||  ||||| ||||  ||||||| |||||||||||||||||||||||||||||||| ||||||||| || ||| ||| |||||||||| ||    
T  22669 ttcaataacaacaatagagaaaactttttcaataataaaaattatcaagacaatagtcataaacatattaaatgggcattgaatttcttgcaaataacct 22768  T
Q  100 attagtttacatt-gaaaatatattattaatctatctagtaaacactcaattatagataaaattg 163  Q
    ||| ||||||||| ||||| | ||||||||||||| | ||||||| ||||||||  |||||||||    
T  22769 atttgtttacattggaaaaaacattattaatctattttgtaaacaatcaattatgaataaaattg 22833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 428482 - 428333
Alignment:
Q  3 tcaataacaattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctat 101  Q
    ||||||| | ||||||| |||| ||||||||  |||||||||| ||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||    
T  428482 tcaataatagttatagagaaaacttttcaacggtaaaaattattaagacaatagtaataaacaaattaaatggacaat-agtttcttacaaataatctat 428384  T
Q  102 tagtttacatt-gaaaatatattattaatctatctagtaaacactcaatta 151  Q
    | | ||||||| ||||||| ||||||||||||| ||||||||| |||||||    
T  428383 ttgcttacattggaaaatacattattaatctatttagtaaacagtcaatta 428333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 11142660 - 11142799
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |||| ||||| |||||  |||||| ||||||| | |||    
T  11142660 ttttcaacaataaaaattatcaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctattcatttacatttgaaaagacatt 11142759  T
Q  124 attaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || ||||||  ||||||| |||||||||||    
T  11142760 attaatctat-tattaaacagacaattattgataaaattgg 11142799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 1600682 - 1600595
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||  ||||||||    
T  1600682 ttttcaacaataaaaattatcaagacaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacctatttatttacatt 1600595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 10406306 - 10406145
Alignment:
Q  3 tcaataacaattatagaaaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctatt 102  Q
    |||||||||| || |||||   ||||||||||||| |||||||||||||||||||||  ||||| |||||||||| ||||||| |||||||||| |||||    
T  10406306 tcaataacaactagagaaacttttttcaacaataataattatcaagacaatagtcattgacaaactaaatggacagtgagtttcttgcaaataacctatt 10406207  T
Q  103 agtttacatt-gaaaatatattattaatctatctagtaaacactcaattatagataaaattgg 164  Q
      |||||||| ||||| | ||||||||||||| || |||||| |||||||| ||| |||||||    
T  10406206 tatttacattcgaaaaaacattattaatctat-tattaaacagtcaattattgatgaaattgg 10406145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 44961438 - 44961547
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||  |||||| ||||||| | ||     
T  44961438 ttttcaacagtaaaaattatcaagacaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatc 44961537  T
Q  124 attaatctat 133  Q
    ||||||||||    
T  44961538 attaatctat 44961547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 19313369 - 19313508
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| || | ||||||| ||||||||||  ||||  |||||| ||||||| | |||    
T  19313369 ttttcaacaataaaaattatcaaaacaatagtcatagacaaattaaatagatagtgagtttcttgcaaataacttatttatttacatttgaaaagacatt 19313468  T
Q  124 attaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || |||||| |||||||| ||| |||||||    
T  19313469 attaatctat-tattaaacagtcaattattgatgaaattgg 19313508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 10177885 - 10178023
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||||||  ||||||| |||||||||| |||||  || ||| ||||||| | |||    
T  10177885 ttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacggtgagtttcttgcaaataacctatttattcacatttgaaaaaacatt 10177984  T
Q  124 attaatctatctagtaaacactcaattatagataaaattg 163  Q
    |||||||||| || |||||| |||||||| ||| ||||||    
T  10177985 attaatctat-tattaaacagtcaattattgatgaaattg 10178023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 15757726 - 15757813
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  15757726 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 15757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 33240946 - 33240845
Alignment:
Q  68 taaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattggtt 166  Q
    |||||||||| ||| ||||||| |||| | |||||||||||||||| |||||| ||||||||||||| || ||||||||||||||| |||||||||||||    
T  33240946 taaatggacattgaatttattgaaaatgacctattagtttacattggaaaatacattattaatctatttattaaacactcaattatggataaaattggtt 33240847  T
Q  167 tt 168  Q
    ||    
T  33240846 tt 33240845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 30950906 - 30950794
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacattg-aaaatatattattaatctatctagtaaacactcaattatag 154  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | ||||||||| |||| | ||||||||||||| ||||||||  |||||||| |    
T  30950906 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattgaaaaagacattattaatctatttagtaaacggtcaattatgg 30950807  T
Q  155 ataaaattggttt 167  Q
    |||||||||||||    
T  30950806 ataaaattggttt 30950794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 10620113 - 10620200
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||| |||||| |||||  ||||||||    
T  10620113 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgaaaataacctatttatttacatt 10620200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 23614619 - 23614758
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatat-att 123  Q
    |||||||||| |||||||| ||||||||||||| || ||||||||||  |||||||||||| ||||||||||  ||||  |||||||| ||||  | |||    
T  23614619 ttttcaacaacaaaaattaacaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcatt 23614718  T
Q  124 attaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  23614719 attaatctat-tattaaacagacaattattgatgaaattgg 23614758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 33241428 - 33241370
Alignment:
Q  3 tcaataacaattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcata 60  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  33241428 tcaacaacaattatagagaaaacttttcaacaataaaaattatcaagacaatagtcata 33241370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 47367825 - 47367937
Alignment:
Q  4 caataacaattatagaaaaaa--ttttcaacaat-aaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatcta 100  Q
    ||||||||| |||||| ||||  |||| |||||| ||||||||||||| ||||||| ||||||| || ||| || |||||||||| ||||||||| ||||    
T  47367825 caataacaactatagagaaaacttttttaacaattaaaaattatcaaggcaatagttataaacatatcaaacgggcaatgagtttcttgcaaatagtcta 47367924  T
Q  101 ttagtttacattg 113  Q
     | ||||||||||    
T  47367925 attgtttacattg 47367937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 29799150 - 29799042
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactcaattataga 155  Q
    ||||||||||||||||||| | ||||||| || ||||||| ||||| ||||||||| | ||| | |||||||||| || |||||||   |||| ||||||    
T  29799150 cataaacaaattaaatggatattgagtttcttacaaataacctatttgtttacattgggaaagacattattaatcaatttagtaaatgatcaaatataga 29799051  T
Q  156 taaaattgg 164  Q
    |||||||||    
T  29799050 taaaattgg 29799042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 46515604 - 46515716
Alignment:
Q  49 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 148  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| ||||||  | || |||||||||||||| | |||| |||||||| || |||||| ||||    
T  46515604 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgtttacattgaaaa-acattaataatctatttattaaacagtcaa 46515701  T
Q  149 ttatagataaaattg 163  Q
    | || ||||||||||    
T  46515702 tcatggataaaattg 46515716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 21972427 - 21972538
Alignment:
Q  49 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 148  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| ||||||  | || | |||||||||||| | |||| |||||||| || |||||| ||||    
T  21972427 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgcttacattgaaaa-acattaataatctatttattaaacagtcaa 21972524  T
Q  149 ttatagataaaatt 162  Q
    |||| |||||||||    
T  21972525 ttatggataaaatt 21972538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 52111132 - 52111063
Alignment:
Q  3 tcaataacaattatagaaaaaattttcaacaataaaaattatcaagacaatagtcataaacaaattaaat 72  Q
    |||||||||| || ||||||   ||||||||||||||||||||| || |||| |||||||||||||||||    
T  52111132 tcaataacaactagagaaaactatttcaacaataaaaattatcatgaaaataatcataaacaaattaaat 52111063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 28403123 - 28403210
Alignment:
Q  74 gacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaa 160  Q
    ||||||||||||  ||||||||| ||||| |||||||||| |||| | |||||| |||||| || |||||  ||||||||| ||||||    
T  28403123 gacaatgagtttcatgcaaataacctatttgtttacattgaaaaagacattattgatctatttaataaacggtcaattataaataaaa 28403210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 29363641 - 29363504
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  |||||| ||||||| | |||    
T  29363641 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatt 29363542  T
Q  124 attaatctatctagtaaacactcaattatagataaaatt 162  Q
    |||||||||| || ||||||  ||||||| ||| |||||    
T  29363541 attaatctat-tattaaacaaacaattattgatgaaatt 29363504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 29486420 - 29486577
Alignment:
Q  3 tcaataacaattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctat 101  Q
    ||||||| | ||||||| |||| ||||||| | |||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||    
T  29486420 tcaataatagttatagagaaaacttttcaagagtaaaaattattaagacaatagtcataaacaaattaattggacaat-agtttcttgcaaataacctat 29486518  T
Q  102 tagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaa 159  Q
    |   |||||||| ||||||||||| |||||||| ||||||||  |||||||| ||||||    
T  29486519 tttcttacattgaaaaatatattaataatctatttagtaaacggtcaattatggataaa 29486577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 1780740 - 1780628
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 154  Q
    ||||||||||||||||||||| ||||||| |||||||||| | ||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  1780740 cataaacaaattaaatggacattgagtttcttgcaaataaccaatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 1780641  T
Q  155 ataaaattggttt 167  Q
    |||||||||||||    
T  1780640 ataaaattggttt 1780628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 34729825 - 34729902
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctatt 102  Q
    ||||||||||||||||| |||| ||||||||||||| |||| ||||||| ||||||||||| |||||||||| |||||    
T  34729825 ttttcaacaataaaaatgatcatgacaatagtcatagacaagttaaatgtacaatgagtttcttgcaaataacctatt 34729902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 24428798 - 24428907
Alignment:
Q  35 taaaaattatcaagacaatagtcataaaca---aattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatc 130  Q
    |||||||||| |||||||||||||||||||   ||||||||||||| ||||||| ||| |||||| ||||| ||| |||||| |||| | ||||||||||    
T  24428798 taaaaattattaagacaatagtcataaacaacaaattaaatggacattgagtttcttgaaaataacctatttgttaacattgaaaaagacattattaatc 24428897  T
Q  131 tatctagtaa 140  Q
    ||| ||||||    
T  24428898 tatttagtaa 24428907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 22956571 - 22956511
Alignment:
Q  3 tcaataacaattatagaaaaaa--ttttcaacaataaaaattatcaagacaatagtcataa 61  Q
    ||||||||||||||||| | ||  |||||||||||||||| ||||||||||||||||||||    
T  22956571 tcaataacaattatagagagaactttttcaacaataaaaactatcaagacaatagtcataa 22956511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 23831821 - 23831881
Alignment:
Q  3 tcaataacaattatagaaaaaa--ttttcaacaataaaaattatcaagacaatagtcataa 61  Q
    ||||||||||||||||| | ||  |||||||||||||||| ||||||||||||||||||||    
T  23831821 tcaataacaattatagagagaactttttcaacaataaaaactatcaagacaatagtcataa 23831881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 904124 - 904013
Alignment:
Q  49 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 148  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| ||||||  | || |||||||||||||| | |||| |||| ||| || |||||  ||||    
T  904124 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgtttacattgaaaa-acattaataatttatttattaaacggtcaa 904027  T
Q  149 ttatagataaaatt 162  Q
    |||| |||||||||    
T  904026 ttatggataaaatt 904013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 22956504 - 22956432
Alignment:
Q  93 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  22956504 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 22956432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 23831888 - 23831960
Alignment:
Q  93 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  23831888 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 23831960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 8560013 - 8559901
Alignment:
Q  49 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 148  Q
    |||||||| | |||||||| |||| || ||| ||||  || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  8560013 acaatagtgagaaacaaatgaaatagataataagttctttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 8559916  T
Q  149 ttatagataaaattg 163  Q
    |||| ||||||||||    
T  8559915 ttatggataaaattg 8559901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 7028 - 6920
Alignment:
Q  6 ataacaattatagaaaaaatttt--caacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctatta 103  Q
    |||||||||||||  |||| |||  |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||  |||||    
T  7028 ataacaattatagggaaaactttgtcaacaataaaaattatcaagacaatagtcataaacagattaaatgaacaataagtttattgcaaataacatatta 6929  T
Q  104 gtttacatt 112  Q
    |||||||||    
T  6928 gtttacatt 6920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 17653083 - 17652944
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  || ||| ||||||| | |||    
T  17653083 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttattaacatttgaaaagacatt 17652984  T
Q  124 attaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  17652983 attaatctat-tattaaacaaacaattattgatgaaattgg 17652944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 21295982 - 21296069
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  21295982 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 21296069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 46823854 - 46823941
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt 112  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||  ||||||||    
T  46823854 ttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatgagtttcttgcaaataacctatttatttacatt 46823941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 40763813 - 40763925
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 154  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  40763813 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 40763912  T
Q  155 ataaaattggttt 167  Q
    |||||||||||||    
T  40763913 ataaaattggttt 40763925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 16152280 - 16152419
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatat-att 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||||||  |||||||||||| ||||||||||  ||||  |||||||| ||||  | |||    
T  16152280 ttttcaacaacaaaaattatcaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcatt 16152379  T
Q  124 attaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  16152380 attaatctat-tattaaacagacaattattgatgaaattgg 16152419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 29648391 - 29648530
Alignment:
Q  27 ttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattat 125  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||| |||||||  ||||||||||||| || | || ||||| |||| |||| | |||||    
T  29648391 ttcaacgatataaattatcaagacaatagtcataatcaaattaaacggacaataggtttattgcaaatgatttctttgtttatattgaaaaagagattat 29648490  T
Q  126 taatctatctagtaaacactca--attatagataaaattg 163  Q
    |||| ||| ||||||||| |||  ||||| ||||||||||    
T  29648491 taatttatttagtaaacaatcaatattatggataaaattg 29648530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 3458173 - 3458062
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaa-aatatattattaatctatctagtaaacactcaattataga 155  Q
    ||||||||||||||||||| | ||||||| ||||||||||  |||| ||||||| || | || | ||||||||| ||||||||||||  |||||||||||    
T  3458173 cataaacaaattaaatggatattgagtttcttgcaaataacttatttgtttacactggagaagacattattaatttatctagtaaacggtcaattataga 3458074  T
Q  156 taaaattggttt 167  Q
    ||||||||||||    
T  3458073 taaaattggttt 3458062  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 20843284 - 20843176
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctatctagtaaacactcaattataga 155  Q
    ||||||||| ||||||||||| ||| ||| |||||||||| ||||| ||||||||| ||||| | ||||||||||||| |||||||   || ||||| ||    
T  20843284 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaatggtctattatgga 20843185  T
Q  156 taaaattgg 164  Q
    |||||||||    
T  20843184 taaaattgg 20843176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 11027979 - 11027911
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaa 93  Q
    ||||||| || ||||||| ||||||||||||||||  |||||||||||| ||||||||||| |||||||    
T  11027979 ttttcaaaaacaaaaattctcaagacaatagtcatggacaaattaaatgtacaatgagtttcttgcaaa 11027911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 11906721 - 11906662
Alignment:
Q  3 tcaataacaattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataa 61  Q
    ||||||||||||||||| | || |||||||||||||||| ||||||||||||||||||||    
T  11906721 tcaataacaattatagagagaacttttcaacaataaaaactatcaagacaatagtcataa 11906662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 35106593 - 35106481
Alignment:
Q  49 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 148  Q
    |||||||| |||||||||||||| ||||||| ||||| ||| |||| | || ||  ||||||||||||| | |||| |||||||| || |||||| ||||    
T  35106593 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaattacctgtttctttacattgaaaa-acattaataatctatttattaaacagtcaa 35106496  T
Q  149 ttatagataaaattg 163  Q
    |||| ||||||||||    
T  35106495 ttatggataaaattg 35106481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 38171407 - 38171466
Alignment:
Q  3 tcaataacaattatagaaaaaa-ttttcaacaataaaaattatcaagacaatagtcataa 61  Q
    |||| ||||||||| || |||| |||||||||| ||||||||||||||||||||||||||    
T  38171407 tcaacaacaattattgagaaaacttttcaacaaaaaaaattatcaagacaatagtcataa 38171466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 52403404 - 52403345
Alignment:
Q  3 tcaataacaattata-gaaaaaattttcaacaataaaaattatcaagacaatagtcataa 61  Q
    ||||||||||||||| || ||  |||||||||||||||| ||||||||||||||||||||    
T  52403404 tcaataacaattataagagaactttttcaacaataaaaactatcaagacaatagtcataa 52403345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 52403338 - 52403266
Alignment:
Q  93 ataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || ||||||| |||||||||||||||||||| | ||||| | ||| |||| |||||||||||    
T  52403338 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgg 52403266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 19795621 - 19795732
Alignment:
Q  49 acaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattgaaaatatattattaatctatctagtaaacactcaa 148  Q
    |||||||| | |||||||| |||| || ||| ||||| || ||||||| ||||| |||||||||||||| | |||| |||||| | || |||||| ||||    
T  19795621 acaatagtgagaaacaaatgaaatagataataagttt-ttacaaataacctatt-gtttacattgaaaagacattagtaatct-tttattaaacaatcaa 19795717  T
Q  149 ttatagataaaattg 163  Q
    |||| ||||||||||    
T  19795718 ttatggataaaattg 19795732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 42799275 - 42799168
Alignment:
Q  35 taaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacatt-gaaaatatattattaatctat 133  Q
    |||||||| | |||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||| ||||| | |||||||||||||    
T  42799275 taaaaattttaaagacaatagtcataaacaaattaaatggacattgagtttcttgcaaataaactatttgtttacattggaaaagacattattaatctat 42799176  T
Q  134 ctagtaaa 141  Q
     |||||||    
T  42799175 ttagtaaa 42799168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 4435218 - 4435380
Alignment:
Q  3 tcaataacaattatagaaaaaa--ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatcta 100  Q
    ||||||||||||||||| |||   |||| |||||||||||||||| |||||||||||||| | || || |||||||||||||||| ||| |||||| |||    
T  4435218 tcaataacaattatagagaaaccttttttaacaataaaaattatctagacaatagtcatagataattttaatggacaatgagtttcttgtaaataaccta 4435317  T
Q  101 ttagtttaca-ttgaaaatatattattaatctatctagtaaacactcaattatagataaaattg 163  Q
    ||  |||||| ||||||| | ||||||||||||| || ||||||  ||||||| ||| ||||||    
T  4435318 tttatttacatttgaaaagacattattaatctat-tattaaacagacaattatggatgaaattg 4435380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 16546354 - 16546466
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattag-tttacatt-gaaaatatattattaatctatctagtaaacactcaattatag 154  Q
    ||||||||||||||||||||| ||||||| || ||||||| ||||| | |||||||| ||||| | ||||||||||||| ||||||||  |||||||| |    
T  16546354 cataaacaaattaaatggacattgagtttcttccaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 16546453  T
Q  155 ataaaattggttt 167  Q
    |||||||||||||    
T  16546454 ataaaattggttt 16546466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 39070292 - 39070180
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattagttt-acattg-aaaatatattattaatctatctagtaaacactcaattatag 154  Q
    |||||| |||||||||||||| ||||||| |||||||||| ||||| |||| |||||| |||| | ||||||||||||| ||||||||  |||||||| |    
T  39070292 cataaataaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 39070193  T
Q  155 ataaaattggttt 167  Q
    |||||||||||||    
T  39070192 ataaaattggttt 39070180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 45656043 - 45655935
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtttacattg-aaaatatattattaatctatctagtaaacactcaattataga 155  Q
    ||||||||| | ||||||||| ||| ||| |||||||||| ||||| |||||||||| |||| | ||||||||||||| ||||||||  ||||||||  |    
T  45656043 cataaacaattgaaatggacattgaatttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgaa 45655944  T
Q  156 taaaattgg 164  Q
    |||||||||    
T  45655943 taaaattgg 45655935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 38881702 - 38881761
Alignment:
Q  26 tttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagttt 85  Q
    |||||||||||||||||||||||| |||||||||| | |||||||||| |||||||||||    
T  38881702 tttcaacaataaaaattatcaagataatagtcatagataaattaaatgtacaatgagttt 38881761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 26180642 - 26180690
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatg 73  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||    
T  26180642 tttttaacaattaaaactatcaagacaatagtcataaacatattaaatg 26180690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 37614591 - 37614680
Alignment:
Q  57 cataaacaaattaaatggacaatgagtttattgcaaataatctattagtt---tacatt-gaaaatatattattaatctatctagtaaac 142  Q
    |||||||||||||||| |||| ||| ||| |||||||||| ||||| |||   |||||| ||||| | ||||||||||||| ||||||||    
T  37614591 cataaacaaattaaatagacattgaatttcttgcaaataacctatttgtttactacattggaaaagacattattaatctatttagtaaac 37614680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 31106814 - 31106858
Alignment:
Q  8 aacaattatagaaaaaattttcaacaataaaaattatcaagacaa 52  Q
    ||||| |||||| ||  ||||||||||||||||||||||||||||    
T  31106814 aacaactatagagaagtttttcaacaataaaaattatcaagacaa 31106858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 292364 - 292225
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||| |||||  |||| | ||||||| | | |    
T  292364 ttttcaacaataaaaattatcaagacaatattcatagacaaattaaatgaacaatgagtttcttgcgaataacctatttatttatatttgaaaagacact 292265  T
Q  124 attaatctatctagtaaacactcaattatagataaaattgg 164  Q
    |||||||||| || ||||||  ||||||| ||| |||||||    
T  292264 attaatctat-tattaaacaggcaattattgatgaaattgg 292225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 6672 - 6773
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcataaacaaattaaatggacaatgagtttattgcaaataatctattagtttaca-ttgaaaatatatt 123  Q
    |||||||||||||||||||   |||||||||||||| |||||||||||||||||||| ||| |||||||||| |||||  |||||| ||||||| | |||    
T  6672 ttttcaacaataaaaatta---agacaatagtcatagacaaattaaatggacaatgaatttcttgcaaataacctatttatttacatttgaaaagacatt 6768  T
Q  124 attaa 128  Q
    |||||    
T  6769 attaa 6773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 778 - 812
Alignment:
Q  25 ttttcaacaataaaaattatcaagacaatagtcat 59  Q
    |||||||||||||||||||||||||||||||||||    
T  778 ttttcaacaataaaaattatcaagacaatagtcat 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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