View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_low_63 (Length: 264)
Name: NF1048_low_63
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_low_63 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 11530461 - 11530604
Alignment:
| Q |
20 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
119 |
Q |
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| T |
11530461 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
11530560 |
T |
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| Q |
120 |
acattccaacaccttgtatgaggatttaatcgagacagcaataa |
163 |
Q |
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| T |
11530561 |
actttccaacaccttgtatgaggatttaatcgagacagcaataa |
11530604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 11555958 - 11556101
Alignment:
| Q |
20 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
119 |
Q |
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| T |
11555958 |
tcagacagaaataaaacaccatagacgcagctaggcttttcgataaattccggaacattttttcctccaatacactcctcctcgcatccaaaaccaacaa |
11556057 |
T |
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| Q |
120 |
acattccaacaccttgtatgaggatttaatcgagacagcaataa |
163 |
Q |
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| T |
11556058 |
actttccaacaccttgtatgacgatttaatcgagacagcaataa |
11556101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 11556521 - 11556559
Alignment:
| Q |
116 |
acaaacattccaacaccttgtatgaggatttaatcgaga |
154 |
Q |
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| T |
11556521 |
acaaaccttccaacaccttgtatgacgatttaatcgaga |
11556559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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