View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_low_64 (Length: 264)
Name: NF1048_low_64
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_low_64 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 38279861 - 38279627
Alignment:
| Q |
30 |
aattacactttggattataaaatctaaacaaaaacaaaatgatcaatttgaaggacgtgcgaaaagaaaataatttctattcccaaaaggagataaaatg |
129 |
Q |
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| T |
38279861 |
aattacactttggtttataaaatctaaacaaaaacaaaatgatcaatttgaaggacgtgcaaaaagaaaataatttctattctcaaaaggagataaaatg |
38279762 |
T |
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| Q |
130 |
gtcaatttgaagagtgcacgaacataaacacagttcttctcttctgtttagaggtttaaaacgtttaaaatggaaggatgatgatatatgacatagattg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
38279761 |
gtcaatttgaagagtgcacgaacataaacacagttcttctcttctctttagaggtttaaaacgtttaaaatggaagaatgatgatatatgacataaattg |
38279662 |
T |
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| Q |
230 |
agacactcaagagacaatctatgtccatacacatc |
264 |
Q |
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|||| || ||||||||||||||||||||||||||| |
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| T |
38279661 |
agacgcttaagagacaatctatgtccatacacatc |
38279627 |
T |
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