View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1048_low_70 (Length: 251)
Name: NF1048_low_70
Description: NF1048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1048_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 25698285 - 25698134
Alignment:
| Q |
1 |
cgtcattgcatcttaccattagtgtttgattgctttatagtttgactcctcataacttaaacattcaaccaactagtaaggagagaacttgctcgttcac |
100 |
Q |
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| T |
25698285 |
cgtcattgcatcttaccattagtgtttgattgctttatagtttgactcctcataacttggacattcaaccaactagtaaggagagaacttgctcgttcac |
25698186 |
T |
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| Q |
101 |
aaattgtttgagctgattcgttgatattgctccatactttattgttcctatg |
152 |
Q |
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| T |
25698185 |
aaattgtttgagctgattcgttgatattgctccatactttattgttcctatg |
25698134 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 35208169 - 35208320
Alignment:
| Q |
4 |
cattgcatcttaccattagtgtttgattgctttatagtttgactcctcataacttaaacattcaaccaactagtaaggagagaacttgctcgttcacaaa |
103 |
Q |
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| T |
35208169 |
cattgcatttcaccattagtattcgattgctcagtagtttgattacgcataa-ttaggcattcaaccgactattaagaagaaagttttcttgttcacaaa |
35208267 |
T |
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| Q |
104 |
ttgtttgagctgattcgtt----gatattgctccatactttattgttcctatg |
152 |
Q |
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| T |
35208268 |
ttgtttaagctgattcgttaatatatattgttccatactttattgctcctatg |
35208320 |
T |
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