View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10490_low_1 (Length: 430)

Name: NF10490_low_1
Description: NF10490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10490_low_1
NF10490_low_1
[»] chr1 (6 HSPs)
chr1 (65-365)||(12540979-12541275)
chr1 (93-208)||(12534973-12535092)
chr1 (149-200)||(47569740-47569791)
chr1 (136-200)||(28239767-28239831)
chr1 (40-83)||(12531936-12531979)
chr1 (150-196)||(14508386-14508432)
[»] chr2 (2 HSPs)
chr2 (304-417)||(36007875-36007987)
chr2 (158-200)||(16375795-16375837)
[»] chr6 (1 HSPs)
chr6 (134-193)||(384134-384193)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 65 - 365
Target Start/End: Complemental strand, 12541275 - 12540979
Alignment:
Q  65 acatgatcaaattagaatagcattaattaaaacattattattttccagtacacacacttggaagcaaagctatagaagtgaaagtaaaagcagaagcatg 164  Q
    |||||| |||||||||||  ||||||||||  |||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  12541275 acatgaacaaattagaattacattaattaag-cattattattttgcagtgcacacacttggaagcaaagatgtagaagtgaaagtaaaagcagaagcatg 12541177  T
Q  165 gtccttaaattagaaaactagaaagcatgtaatctagaatattcaataggc---aagtagctccttctgtccttcctttgcaacatccatcactatttct 261  Q
    |||||||||||| ||||||||||||||||||||||| ||||||| |  |||   | ||||||||||| |||||||||||| |  |||||||  ||||||     
T  12541176 gtccttaaattaaaaaactagaaagcatgtaatctacaatattccaccggcaggacgtagctccttccgtccttcctttgaaggatccatccttatttca 12541077  T
Q  262 gtattgtacagctagcaccaaattattatttttatcaggcatgctaaggtcaaacaagaacacacttgaaataaatataatcataataattaacctcagt 361  Q
     ||| ||||||||||  |||      |||| |||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||    
T  12541076 atatggtacagctagaccca------tattattatcaggaaagctaaggtcaagcaagaacacacatgaaataaatataatcataataattaacctaagt 12540983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 12534973 - 12535092
Alignment:
Q  93 aaaacattattattttccagtacacacacttggaagcaaagcta----tagaagtgaaagtaaaagcagaagcatggtccttaaattagaaaactagaaa 188  Q
    |||||||  |||||||| ||| ||||||||||||||||||  ||    ||||| ||  ||||||| ||||||||| |||||| |||||||||||||||||    
T  12534973 aaaacatcgttattttctagtgcacacacttggaagcaaacttacatatagaaatgcgagtaaaaacagaagcatagtcctttaattagaaaactagaaa 12535072  T
Q  189 gcatgtaatctagaatattc 208  Q
    ||| ||| |||| |||||||    
T  12535073 gcaagtagtctacaatattc 12535092  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 47569791 - 47569740
Alignment:
Q  149 taaaagcagaagcatggtccttaaattagaaaactagaaagcatgtaatcta 200  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  47569791 taaaagcaaaaacatagtccttaaattagaaaactagaaagcatgtaatcta 47569740  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 28239831 - 28239767
Alignment:
Q  136 atagaagtgaaagtaaaagcagaagcatggtccttaaattagaaaactagaaagcatgtaatcta 200  Q
    ||||||||| || |||||||| || ||  ||||||||||||| ||||||||||||||||||||||    
T  28239831 atagaagtgcaattaaaagcaaaaacaaagtccttaaattagcaaactagaaagcatgtaatcta 28239767  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 12531936 - 12531979
Alignment:
Q  40 gaacatatatgggccaaatacgcagacatgatcaaattagaata 83  Q
    |||||||||| ||||||||||||||||| |||||||||||||||    
T  12531936 gaacatatatcggccaaatacgcagacacgatcaaattagaata 12531979  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 14508386 - 14508432
Alignment:
Q  150 aaaagcagaagcatggtccttaaattagaaaactagaaagcatgtaa 196  Q
    ||||||| |||||| |||||| |||||||||| ||||||||||||||    
T  14508386 aaaagcaaaagcatagtcctttaattagaaaaatagaaagcatgtaa 14508432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 417
Target Start/End: Original strand, 36007875 - 36007987
Alignment:
Q  304 gctaaggtcaaacaagaacacacttgaaataaatataatcataataattaacctcagtaat-atgttccaagaaaaagattggaaaatgacaaactcaac 402  Q
    ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| || |||| ||||| | |  |||||||  ||||||||||    
T  36007875 gctaaggtcaagcaagaacacccttgaaataaatataatcaaaataattaacctcagtaatgattttcc-agaaaca-aacggaaaatctcaaactcaac 36007972  T
Q  403 tcttccacatttcta 417  Q
    |||||||| ||||||    
T  36007973 tcttccacctttcta 36007987  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 16375837 - 16375795
Alignment:
Q  158 aagcatggtccttaaattagaaaactagaaagcatgtaatcta 200  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||    
T  16375837 aagcatgatcctttaattagaaaactacaaagcatgtaatcta 16375795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 384134 - 384193
Alignment:
Q  134 ctatagaagtgaaagtaaaagcagaagcatggtccttaaattagaaaactagaaagcatg 193  Q
    ||||||||||| || ||||||||||||||| || | ||||||||||||||||||||||||    
T  384134 ctatagaagtgcaactaaaagcagaagcatagtgcataaattagaaaactagaaagcatg 384193  T

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