View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10490_low_4 (Length: 247)
Name: NF10490_low_4
Description: NF10490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10490_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 10806202 - 10805977
Alignment:
| Q |
11 |
cagagaacttgaccgaataataaatctaggatagactatgataccattttagattttggatctaagggataacttaacttcatcccacaaaatcgacttg |
110 |
Q |
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| T |
10806202 |
cagagaacttgaccgaataataaatctaggatagactaagataccattttagattttggatctgagggataacttaacttcatc----aaaatcgacttg |
10806107 |
T |
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| Q |
111 |
taagacaaggactgctcaatagttttagatcacaatcgcggatgcattgtgatccttgatatagtgaaaaaattccagtaaaatataaccgatagaacca |
210 |
Q |
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| T |
10806106 |
taagacaaggactgctcaatagttttagatcacaatcgcggatgcattgtgatccttgatatagtgaaaaaattccagtaaaatataaccgatagaacca |
10806007 |
T |
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| Q |
211 |
caaatggagatatcaaaacactgatgtcca |
240 |
Q |
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| T |
10806006 |
caaatggagatatcataacactgatgtcca |
10805977 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 46976224 - 46976280
Alignment:
| Q |
12 |
agagaacttgaccgaataataaatctaggatagactatgataccattttagattttg |
68 |
Q |
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||||| ||||||| ||||| |||| ||||||||||| ||||||||||||||| |||| |
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| T |
46976224 |
agagatcttgacctaataacaaatttaggatagactctgataccattttagagtttg |
46976280 |
T |
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