View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10490_low_5 (Length: 237)

Name: NF10490_low_5
Description: NF10490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10490_low_5
NF10490_low_5
[»] scaffold0194 (1 HSPs)
scaffold0194 (1-227)||(27009-27236)
[»] chr2 (13 HSPs)
chr2 (57-171)||(27007206-27007320)
chr2 (61-169)||(20143007-20143115)
chr2 (58-171)||(19945682-19945795)
chr2 (61-174)||(14131190-14131303)
chr2 (63-167)||(13716673-13716777)
chr2 (61-138)||(31264828-31264905)
chr2 (61-169)||(3167935-3168042)
chr2 (61-171)||(38320154-38320271)
chr2 (61-171)||(32975981-32976093)
chr2 (58-137)||(31125376-31125455)
chr2 (78-169)||(31845453-31845544)
chr2 (90-169)||(35457439-35457518)
chr2 (61-136)||(37899474-37899549)
[»] chr1 (12 HSPs)
chr1 (55-171)||(35413063-35413179)
chr1 (56-137)||(29657435-29657516)
chr1 (56-135)||(35149620-35149699)
chr1 (77-171)||(10061629-10061723)
chr1 (89-171)||(43537134-43537216)
chr1 (70-138)||(26470014-26470082)
chr1 (95-171)||(21540111-21540187)
chr1 (61-135)||(48852716-48852790)
chr1 (61-137)||(9113421-9113498)
chr1 (59-102)||(49402006-49402049)
chr1 (61-110)||(34475804-34475853)
chr1 (56-100)||(13085032-13085076)
[»] chr4 (10 HSPs)
chr4 (57-171)||(42504151-42504265)
chr4 (61-138)||(37762877-37762954)
chr4 (69-138)||(30220769-30220838)
chr4 (66-122)||(19482799-19482855)
chr4 (61-138)||(16528636-16528713)
chr4 (61-122)||(19663274-19663335)
chr4 (61-116)||(19663374-19663429)
chr4 (61-171)||(5288559-5288669)
chr4 (115-171)||(19482555-19482611)
chr4 (90-159)||(24060625-24060694)
[»] chr5 (10 HSPs)
chr5 (58-171)||(30735279-30735392)
chr5 (54-171)||(3040214-3040331)
chr5 (57-148)||(25493879-25493970)
chr5 (61-171)||(34280067-34280177)
chr5 (61-169)||(30071810-30071918)
chr5 (61-171)||(30700831-30700941)
chr5 (61-171)||(40519216-40519325)
chr5 (61-138)||(20359983-20360060)
chr5 (61-138)||(24402114-24402192)
chr5 (83-135)||(9666899-9666951)
[»] chr6 (6 HSPs)
chr6 (61-171)||(32871713-32871824)
chr6 (61-171)||(3855697-3855806)
chr6 (61-171)||(34713538-34713648)
chr6 (61-171)||(2130453-2130563)
chr6 (61-171)||(6784663-6784773)
chr6 (76-171)||(28867222-28867317)
[»] chr8 (6 HSPs)
chr8 (61-171)||(25124407-25124517)
chr8 (61-169)||(5718408-5718516)
chr8 (55-171)||(29414419-29414535)
chr8 (61-167)||(38585049-38585155)
chr8 (61-171)||(33543385-33543492)
chr8 (86-171)||(5686276-5686361)
[»] chr3 (9 HSPs)
chr3 (61-171)||(1632845-1632955)
chr3 (58-171)||(18271921-18272034)
chr3 (74-171)||(26442986-26443083)
chr3 (55-171)||(1713933-1714049)
chr3 (61-137)||(45852895-45852971)
chr3 (69-138)||(2671973-2672042)
chr3 (56-135)||(10593417-10593496)
chr3 (61-145)||(31192122-31192206)
chr3 (61-135)||(34905919-34905993)
[»] chr7 (10 HSPs)
chr7 (61-164)||(46413704-46413807)
chr7 (61-171)||(23611711-23611820)
chr7 (90-171)||(21882759-21882840)
chr7 (79-171)||(22631517-22631609)
chr7 (86-171)||(1985043-1985128)
chr7 (61-138)||(20125660-20125737)
chr7 (61-145)||(19511473-19511557)
chr7 (61-135)||(8123764-8123838)
chr7 (102-170)||(23730507-23730573)
chr7 (58-114)||(15127548-15127604)
[»] scaffold0247 (1 HSPs)
scaffold0247 (61-171)||(19227-19337)


Alignment Details
Target: scaffold0194 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 27009 - 27236
Alignment:
Q  1 atgcgttcatataatattactttt-ttatacatctacccattcacatcttatgagataggaaaatgatagatacagtgacaaaatttatcaagaaaattt 99  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27009 atgcgttcatataatattactttttttatacatgtacccattcacatcttatgagatagggaaatgatagatacagtgacaaaatttatcaagaaaattt 27108  T
Q  100 caagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataacagatatatatgcttcatgatattgtattt 199  Q
    |||||| |||||||||||||||| |||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  27109 caagacagtgtatttgttaacacctttccttaattacactctattatctcccttgatttccgccaaataacagatatatatgcttcatgatattgtattt 27208  T
Q  200 tttgtgatgtgtccaggtagctagtgat 227  Q
    ||||||||||||||||||||||||||||    
T  27209 tttgtgatgtgtccaggtagctagtgat 27236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 27007320 - 27007206
Alignment:
Q  57 aggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgat 156  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||| || ||||    
T  27007320 aggaaattgatagatacagtgacaaaatttatcaagaaaattttaagacagtgtatttgttaacacttttccttaaatacacactattacctcccttgat 27007221  T
Q  157 ttccgccaaataaca 171  Q
    |||||||||||||||    
T  27007220 ttccgccaaataaca 27007206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 20143115 - 20143007
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||||| |||||||||||||||   |||||||||| ||||||||    
T  20143115 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagatagtgtattttctaacacctttccttaattacacatcattaccttccttgatttcc 20143016  T
Q  161 gccaaataa 169  Q
    |||||||||    
T  20143015 gccaaataa 20143007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 19945682 - 19945795
Alignment:
Q  58 ggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatt 157  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |  ||||||||||||||| | ||||||| || | |||    
T  19945682 ggaaaatgatagatacagtgacaaaatttatcaagaaaattttaagacagtgtatttgttaatatctttccttaattacacaccattacctcccttaatt 19945781  T
Q  158 tccgccaaataaca 171  Q
    |||| |||||||||    
T  19945782 tccgtcaaataaca 19945795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 14131303 - 14131190
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||||||||||||||||||||||| |||||||||| ||||  ||||||||| |||||| ||||||||||||||| | |||| ||  | ||||||||    
T  14131303 aaatgatagatacagtgacaaaatttatgaagaaaattttaagatagtgtatttgctaacacatttccttaattacacaccattatctcgcttgatttcc 14131204  T
Q  161 gccaaataacagat 174  Q
    ||||||||||||||    
T  14131203 gccaaataacagat 14131190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 13716673 - 13716777
Alignment:
Q  63 atgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgc 162  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||| ||||||||||| ||||||||| |  |||||| |||    
T  13716673 atgatagatacagtgacaaaatttatcaagaaaatttcaaaacagtgtatttgctaacaccttttcttaattacacactattacctcctttgattttcgc 13716772  T
Q  163 caaat 167  Q
    |||||    
T  13716773 caaat 13716777  T

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Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 31264905 - 31264828
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacac 138  Q
    |||||||||||||||||||||||||||||||  |||||| ||||  ||||||||| ||||||||||||||||||||||    
T  31264905 aaatgatagatacagtgacaaaatttatcaaacaaattttaagatagtgtatttgctaacacttttccttaattacac 31264828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 3168042 - 3167935
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||||||| ||||||||||||||||||||||||||  | |  || |||||| |||||| |||| ||||||||||   |||||||||  ||||||||    
T  3168042 aaatgatagata-agtgacaaaatttatcaagaaaatttttaaatagtatatttgctaacacctttctttaattacacatcattaccttctttgatttcc 3167944  T
Q  161 gccaaataa 169  Q
    | |||||||    
T  3167943 gacaaataa 3167935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 38320154 - 38320271
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatc-------aagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccat 153  Q
    ||||||||||||||||| |||||||||||       |||||||||| ||||| ||||||||| |||||| |||||||| ||||||   ||||||| |  |    
T  38320154 aaatgatagatacagtggcaaaatttatcaagaaaaaagaaaattttaagacagtgtatttgataacacatttccttatttacacatcattacctccttt 38320253  T
Q  154 gatttccgccaaataaca 171  Q
    ||||||| ||||||||||    
T  38320254 gatttccaccaaataaca 38320271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 32975981 - 32976093
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattac--actctattaccttccatgattt 158  Q
    ||||||||||||||  ||||| || ||||||||||||||||| || ||||||||  |||||| ||| |||||||||  ||  | ||||||||  ||||||    
T  32975981 aaatgatagatacatcgacaatatgtatcaagaaaatttcaaaacagtgtatttactaacaccttttcttaattacataccattttaccttctttgattt 32976080  T
Q  159 ccgccaaataaca 171  Q
    ||| |||||||||    
T  32976081 ccgacaaataaca 32976093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 31125455 - 31125376
Alignment:
Q  58 ggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattaca 137  Q
    |||||||||||||| |||||||||| | |||||| ||||| | ||||  |||||||| ||||||| ||| ||||||||||    
T  31125455 ggaaaatgatagattcagtgacaaactatatcaaaaaaatcttaagatagtgtatttattaacacattttcttaattaca 31125376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 31845544 - 31845453
Alignment:
Q  78 acaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataa 169  Q
    ||||| ||||||||||||||||  |||| ||||||||| |||||  || |||||||||||| | |||||||  | ||||||||| |||||||    
T  31845544 acaaattttatcaagaaaatttttagacagtgtatttgctaacatcttaccttaattacacaccattacctctcttgatttccgacaaataa 31845453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 35457518 - 35457439
Alignment:
Q  90 aagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataa 169  Q
    |||||||||| ||||  || ||||||||||||| ||||||||||||||| | ||||||| |  |||||||||| ||||||    
T  35457518 aagaaaattttaagatagtatatttgttaacacatttccttaattacacaccattacctcctttgatttccgctaaataa 35457439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 37899474 - 37899549
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattac 136  Q
    |||||||||||||||||||||||| |||||||||| |||  ||||  |||||||  |||||| ||||| |||||||    
T  37899474 aaatgatagatacagtgacaaaatgtatcaagaaattttttagacaatgtatttactaacacatttccataattac 37899549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 35413179 - 35413063
Alignment:
Q  55 ataggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatg 154  Q
    ||||| |||||||||||| | |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||| || ||    
T  35413179 atagggaaatgatagatataatgacaaaatttatcaagaaaatttcaagagagtgtatttgttaacacctttccttaattacacactattacctcccttg 35413080  T
Q  155 atttccgccaaataaca 171  Q
    ||||||| |||||||||    
T  35413079 atttccgtcaaataaca 35413063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 29657516 - 29657435
Alignment:
Q  56 taggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattaca 137  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  29657516 tagggaaatgatagatacagtgacaaattttatcaagaaaatttcaagacagtgtatttgctaacacctttccttaattaca 29657435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 35149620 - 35149699
Alignment:
Q  56 taggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaatta 135  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||   |||||||| |||||| ||||||||||||    
T  35149620 taggaaaatgataggtacagtgacaaaatttatcaaaaaaatttcaagagaatgtatttgctaacacctttccttaatta 35149699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 10061723 - 10061629
Alignment:
Q  77 gacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataaca 171  Q
    ||||||||||||||||||||||||||||| || |||||| |||||| |||||||||||||||   ||||||| || ||||||| | |||||||||    
T  10061723 gacaaaatttatcaagaaaatttcaagacagtttatttgctaacacatttccttaattacacatcattacctcccttgatttctgtcaaataaca 10061629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 43537134 - 43537216
Alignment:
Q  89 caagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataaca 171  Q
    ||||||||||||||||| |||||||||||||||| |||| |||||||||| | ||||||| || ||||||||| |||||||||    
T  43537134 caagaaaatttcaagacagtgtatttgttaacacatttctttaattacacaccattacctcccttgatttccggcaaataaca 43537216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 26470082 - 26470014
Alignment:
Q  70 atacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacac 138  Q
    ||||||||| |||||||||||||||||||| || || ||||||||| |||||| |||||||||||||||    
T  26470082 atacagtgataaaatttatcaagaaaattttaaaacagtgtatttgctaacacctttccttaattacac 26470014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 21540187 - 21540111
Alignment:
Q  95 aatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataaca 171  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||  |||| || || | |||||||||||||||||    
T  21540187 aatttcaagacagtgtatttgttaacacctttctttaattacacttcattatctcccttaatttccgccaaataaca 21540111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 48852790 - 48852716
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaatta 135  Q
    ||||||||||| ||||||||||||||||||| ||| ||| || ||  |||||||||||||| |||| ||||||||    
T  48852790 aaatgatagatccagtgacaaaatttatcaaaaaatttttaaaacaatgtatttgttaacattttttcttaatta 48852716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 9113421 - 9113498
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgta-tttgttaacacttttccttaattaca 137  Q
    |||||||||||||||||| ||||| |||||||||||||| ||||  ||||| |||| ||| || ||||||||||||||    
T  9113421 aaatgatagatacagtgataaaatatatcaagaaaattttaagagagtgtattttgctaaaacctttccttaattaca 9113498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 49402049 - 49402006
Alignment:
Q  59 gaaaatgatagatacagtgacaaaatttatcaagaaaatttcaa 102  Q
    ||||||||||||||||||||||||||||||||| || |||||||    
T  49402049 gaaaatgatagatacagtgacaaaatttatcaaaaagatttcaa 49402006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 34475853 - 34475804
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgt 110  Q
    ||||||| |||||||||||||||| ||| |||||||||| ||||| ||||    
T  34475853 aaatgatggatacagtgacaaaatgtattaagaaaattttaagacagtgt 34475804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 13085032 - 13085076
Alignment:
Q  56 taggaaaatgatagatacagtgacaaaatttatcaagaaaatttc 100  Q
    |||| |||| ||||||||| ||||||||| |||||||||||||||    
T  13085032 tagggaaataatagatacaatgacaaaatgtatcaagaaaatttc 13085076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 42504151 - 42504265
Alignment:
Q  57 aggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgat 156  Q
    |||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||   ||||||| || ||||    
T  42504151 aggaaaatgatagatacaatgacaaaatgtatcaagaaaattttaagacagtgtatttgttaacacctttccttaattacacatcattacctcccttgat 42504250  T
Q  157 ttccgccaaataaca 171  Q
    ||||| |||||||||    
T  42504251 ttccggcaaataaca 42504265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 37762954 - 37762877
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacac 138  Q
    |||||||||||| |||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  37762954 aaatgatagatagagtgacaaaatttatcaaaaaaatttcaagacaatgtatttgttaacacttttccttaattacac 37762877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 30220838 - 30220769
Alignment:
Q  69 gatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacac 138  Q
    ||||| |||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  30220838 gatacggtgacaaaatgtatcaagaaaattttaagacagtgtatttgctaacacttttccttaattacac 30220769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 19482855 - 19482799
Alignment:
Q  66 atagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacac 122  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  19482855 atagatacagtgacaaaatttatcaagaaaatttcaagacagtttatttgttaacac 19482799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 16528713 - 16528636
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacac 138  Q
    ||||||||||||||| ||||| || |||||||||||||| ||||  |||||||||||||||| |||| ||||||||||    
T  16528713 aaatgatagatacagcgacaacatgtatcaagaaaattttaagatagtgtatttgttaacacatttctttaattacac 16528636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 19663274 - 19663335
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacac 122  Q
    |||||||||||||||||||||||||||| || ||||| ||||||| ||||||||||||||||    
T  19663274 aaatgatagatacagtgacaaaatttataaaaaaaatgtcaagacagtgtatttgttaacac 19663335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 19663429 - 19663374
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgt 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  19663429 aaatgatagatacagtgacaaaatttatcaagaaaattttaagagagtgtatttgt 19663374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 5288669 - 5288559
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||||||| ||||||||| | |||||||||| ||||||||| || |||||| |||||| |||  |||||||||| | |||| || || |||||| |    
T  5288669 aaatgatagatagagtgacaaactgtatcaagaaagtttcaagacggtatatttgctaacacatttttttaattacacaccattatctcccttgatttac 5288570  T
Q  161 gccaaataaca 171  Q
    | |||||||||    
T  5288569 ggcaaataaca 5288559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 19482611 - 19482555
Alignment:
Q  115 gttaacacttttccttaattacactctattaccttccatgatttccgccaaataaca 171  Q
    |||||||| ||||||||||||||| | ||||| | || |||||||||||||||||||    
T  19482611 gttaacacctttccttaattacacaccattacttcccttgatttccgccaaataaca 19482555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 24060694 - 24060625
Alignment:
Q  90 aagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttc 159  Q
    |||||||||| || || ||||||||| |||||| ||||||||||||||| | |||| || || |||||||    
T  24060694 aagaaaattttaaaacagtgtatttgctaacacatttccttaattacacaccattatctcccttgatttc 24060625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 30735279 - 30735392
Alignment:
Q  58 ggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatt 157  Q
    |||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||||||||| ||||||||| |   ||||||| || |||||    
T  30735279 ggaaaatgataggtacagtgacaaaatttatcaagaaaatttcaaaacagtgtatttgctaacactttttcttaattacccagcattacctcccttgatt 30735378  T
Q  158 tccgccaaataaca 171  Q
    ||||||||||||||    
T  30735379 tccgccaaataaca 30735392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 3040214 - 3040331
Alignment:
Q  54 gataggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccat 153  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||| | ||||||| || |    
T  3040214 gatagggaaataatagacacagtgacaaaatttatcaagaaaattttaagacagtgtatttgctaacacctttccttaattacacaccattacctccctt 3040313  T
Q  154 gatttccgccaaataaca 171  Q
    ||||| | ||| ||||||    
T  3040314 gattttcaccagataaca 3040331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 25493970 - 25493879
Alignment:
Q  57 aggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattacct 148  Q
    ||||||||||||||||||||||||| || |||| ||||||||||||||| || |||||||||| || ||||||||||||||| | |||||||    
T  25493970 aggaaaatgatagatacagtgacaacatgtatccagaaaatttcaagacagtatatttgttaatacatttccttaattacacaccattacct 25493879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 34280067 - 34280177
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||||||||||||||| |||||||||| || |||| ||| | |||||||||||||||  ||||||||||||||  | |||| ||||| | ||||||    
T  34280067 aaatgatagatacagtgacagaatttatcaataatattttaagtcagtgtatttgttaacatctttccttaattacataccattatcttccttaatttcc 34280166  T
Q  161 gccaaataaca 171  Q
    |||||||||||    
T  34280167 gccaaataaca 34280177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 30071918 - 30071810
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||  |||||||| |||| | |||||| |||||||| | | |||||||||||||||||    
T  30071918 aaatgatagatagagtgacaaaatttatgaagaaaattttaagacaatgtatttgctaactcctttcctcaattacacaccactaccttccatgatttcc 30071819  T
Q  161 gccaaataa 169  Q
      |||||||    
T  30071818 aacaaataa 30071810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 30700831 - 30700941
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    ||||||||| | ||||||||||||||||||| ||||||| ||||| ||||||||| |||||| ||| |||||||||||   ||||||| || | |||| |    
T  30700831 aaatgataggtgcagtgacaaaatttatcaaaaaaattttaagacagtgtatttgctaacaccttttcttaattacacaacattacctcccttaattttc 30700930  T
Q  161 gccaaataaca 171  Q
    | |||||||||    
T  30700931 gtcaaataaca 30700941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 40519325 - 40519216
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||| |||||||||  || | |||| |||||||||||   |||||| ||| ||||||||    
T  40519325 aaatgataaatacagtgacaaaaattatcaagaaaattttaagacagtgtatttgccaatattttttcttaattacacatcattacc-tccctgatttcc 40519227  T
Q  161 gccaaataaca 171  Q
      |||||||||    
T  40519226 atcaaataaca 40519216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 20360060 - 20359983
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacac 138  Q
    |||||||||||| ||||||||| | |||||||||| ||||||||| || |||||| |||||| |||| ||||||||||    
T  20360060 aaatgatagatagagtgacaaactgtatcaagaaagtttcaagacggtatatttgctaacacctttctttaattacac 20359983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 24402192 - 24402114
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaa--gaccgtgtatttgttaacacttttccttaattacac 138  Q
    |||||||||||||| |||||||||||||||||||||||| ||   ||  |||| ||||||||| ||||||||||||||||    
T  24402192 aaatgatagatacaatgacaaaatttatcaagaaaattttaaagtacattgta-ttgttaacagttttccttaattacac 24402114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 9666899 - 9666951
Alignment:
Q  83 atttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaatta 135  Q
    ||||||||||||||||| ||||  ||||||||| |||||| ||||| ||||||    
T  9666899 atttatcaagaaaattttaagatggtgtatttgctaacacctttccataatta 9666951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 32871713 - 32871824
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttc-aagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttc 159  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||  ||||| |||||||||||||||| ||||||||| || |||||||    
T  32871713 aaatgatagatacaatgacaaaatttatcaagaaaatttctaagacagtgtatttactaacatttttccttaattacacactattacctcccttgatttc 32871812  T
Q  160 cgccaaataaca 171  Q
    || |||||||||    
T  32871813 cgtcaaataaca 32871824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 3855697 - 3855806
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||  |||||| | || | ||||||    
T  3855697 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgta-ttgctaacacctttccttaattacacattattacatcccttaatttcc 3855795  T
Q  161 gccaaataaca 171  Q
    | |||||||||    
T  3855796 gtcaaataaca 3855806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 34713648 - 34713538
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| ||| ||||| ||||| | ||||| | || |||||| |    
T  34713648 aaatgatagatacagtgacaaaatttatcaagaaaattttaagatagtgtatttgttaacaccttttcttaaatacacaccattacatcccttgattttc 34713549  T
Q  161 gccaaataaca 171  Q
    |||||||||||    
T  34713548 gccaaataaca 34713538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 2130453 - 2130563
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||||||| | | | ||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||||| | || |||| |  ||||||||    
T  2130453 aaatgatagatataatcataaaatttatcaagaaaatttcaaaacggtgtatttgctaacacctttccttaattacacacaatcacctcctttgatttcc 2130552  T
Q  161 gccaaataaca 171  Q
    |||||||||||    
T  2130553 gccaaataaca 2130563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 6784663 - 6784773
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||||||| |||||||||||  |||||||||||||| |||  ||||||||| |||||| ||| ||||||||||| | |||| || || ||||||||    
T  6784663 aaatgatagatatagtgacaaaatgcatcaagaaaatttcgagatagtgtatttgctaacaccttttcttaattacacaccattatctcccttgatttcc 6784762  T
Q  161 gccaaataaca 171  Q
    | |||||||||    
T  6784763 gacaaataaca 6784773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 28867317 - 28867222
Alignment:
Q  76 tgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataaca 171  Q
    ||||||| | ||||||||||||||||||||  |||||||| ||| || ||||||||||||||  ||||||||| |  ||||||||  |||||||||    
T  28867317 tgacaaattgtatcaagaaaatttcaagacaatgtatttgctaaaacatttccttaattacatactattacctcctttgatttccaacaaataaca 28867222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 25124517 - 25124407
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||   |||| ||  | ||||||||    
T  25124517 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaataccttttcttaattacacatcattatctctcttgatttcc 25124418  T
Q  161 gccaaataaca 171  Q
    |||||||||||    
T  25124417 gccaaataaca 25124407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 5718408 - 5718516
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||||||||| ||||||| | |||||||||||||| ||||| ||||||||| |||||| ||||||||||||||| | |||||||||| ||||||||    
T  5718408 aaatgatagatacaatgacaaactatatcaagaaaattttaagacagtgtatttgctaacacatttccttaattacacaccattaccttccttgatttcc 5718507  T
Q  161 gccaaataa 169  Q
    | |||||||    
T  5718508 gacaaataa 5718516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 29414535 - 29414419
Alignment:
Q  55 ataggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatg 154  Q
    ||||| |||||||||||||  ||| ||||| ||||||||||||||||| || ||| |||||||||||| |||||||||||| || | |||||||||| ||    
T  29414535 atagggaaatgatagataccttgataaaatatatcaagaaaatttcaaaacagtgcatttgttaacacctttccttaattaaacaccattaccttccttg 29414436  T
Q  155 atttccgccaaataaca 171  Q
    |||| || |||||||||    
T  29414435 attttcggcaaataaca 29414419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 38585049 - 38585155
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    ||||||||||| || |||||||||||||||||||||||||||  |  |||||||| ||||||||||| |||||||||| | ||||||| |  ||||||||    
T  38585049 aaatgatagatccaatgacaaaatttatcaagaaaatttcaaagcaatgtatttgctaacacttttctttaattacacacaattacctcctttgatttcc 38585148  T
Q  161 gccaaat 167  Q
    |||||||    
T  38585149 gccaaat 38585155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 33543492 - 33543385
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||||||||  |||||||||||||||||||||| ||||||| || ||||||||||||| |||  |||||||||| | |||| || || |||||||     
T  33543492 aaatgatagatac--tgacaaaatttatcaagaaaatatcaagacagtatatttgttaacacctttttttaattacacac-attatctcccttgatttca 33543396  T
Q  161 gccaaataaca 171  Q
    |||||||||||    
T  33543395 gccaaataaca 33543385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 5686276 - 5686361
Alignment:
Q  86 tatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataaca 171  Q
    |||||||||||||||||||  | ||||||| |||||| |||| |||||||||   |||||||| || ||||||||| |||||||||    
T  5686276 tatcaagaaaatttcaagatagcgtatttgctaacacatttcattaattacatattattacctcccttgatttccggcaaataaca 5686361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 1632955 - 1632845
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| |||| |||||||||| | ||||||| |  ||||||||    
T  1632955 aaatgatagatacagtgacaaaatttatcaaaaaaattccaagacagtgtatttgttaacacgtttctttaattacacaccattacctcctttgatttcc 1632856  T
Q  161 gccaaataaca 171  Q
    || ||||||||    
T  1632855 gcaaaataaca 1632845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 18271921 - 18272034
Alignment:
Q  58 ggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatt 157  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||  | ||||||| |||||| |||| |||||||||| | ||||||| |  |||||    
T  18271921 ggaaaatgatagatatagtgacaaaatttatcaagaaaattttaagatagagtatttgctaacacctttctttaattacacaccattacctccattgatt 18272020  T
Q  158 tccgccaaataaca 171  Q
    ||||||||||||||    
T  18272021 tccgccaaataaca 18272034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 26443083 - 26442986
Alignment:
Q  74 agtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataaca 171  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| |||  |||||||||| | ||||||| || |||||||||||||||||||    
T  26443083 agtgacaaaatttatcaagaaaatttcaagacagtgtatttggtaacaccttttgttaattacacaccattacctcccttgatttccgccaaataaca 26442986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 1713933 - 1714049
Alignment:
Q  55 ataggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatg 154  Q
    ||||| |||||||| ||||||||| ||||||||| | |||||||||||||| |||||||| ||||||  ||| |||||||| || | |||| || || |     
T  1713933 atagggaaatgataaatacagtgataaaatttattaggaaaatttcaagacagtgtatttattaacatattttcttaattatacacaattatctccctta 1714032  T
Q  155 atttccgccaaataaca 171  Q
    |||||||||||||||||    
T  1714033 atttccgccaaataaca 1714049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 45852895 - 45852971
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattaca 137  Q
    |||||||||||| ||||||||| | |||||||||||||| ||||||||||||||| |||||| ||| ||||||||||    
T  45852895 aaatgatagataaagtgacaaactgtatcaagaaaattttaagaccgtgtatttgctaacaccttttcttaattaca 45852971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 2672042 - 2671973
Alignment:
Q  69 gatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacac 138  Q
    |||| ||||||||||| |||||||||||||| ||||| |||||||||||||||  |||||||||||||||    
T  2672042 gataaagtgacaaaatgtatcaagaaaattttaagacagtgtatttgttaacatctttccttaattacac 2671973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 10593417 - 10593496
Alignment:
Q  56 taggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaatta 135  Q
    |||| ||| |||||||||||||| |||||||||||||||||||| ||||  |||||||||||||||| ||| | ||||||    
T  10593417 tagggaaaagatagatacagtgataaaatttatcaagaaaattttaagatagtgtatttgttaacaccttttcctaatta 10593496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 31192206 - 31192122
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctatta 145  Q
    |||||||||||||||||| ||| | |||||||||||||| ||||| | ||||||| ||| |  ||||||||||||||| ||||||    
T  31192206 aaatgatagatacagtgataaactgtatcaagaaaattttaagacagggtatttgctaatatctttccttaattacacactatta 31192122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 34905993 - 34905919
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaatta 135  Q
    |||| |||||||||   ||||| | |||| ||||||||| ||||| ||||||||| |||||| ||||||||||||    
T  34905993 aaattatagatacaacaacaaactgtatcgagaaaattttaagacagtgtatttgctaacacctttccttaatta 34905919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 46413704 - 46413807
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||||||||| ||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||||||||   ||||||| || ||||||||    
T  46413704 aaatgatagatacattgacaaaatttattaaaaaaatttcaagacagtgtatttgttaacacctttccttaattacacatcattacctcccttgatttcc 46413803  T
Q  161 gcca 164  Q
    ||||    
T  46413804 gcca 46413807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 23611711 - 23611820
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    |||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||| || |||||||  | ||||||||    
T  23611711 aaatgatagatacaatgataaaatttatcaagaaaatttcaaaacagtgtatttgttaacacctttacttaattaca-tccattacctctcttgatttcc 23611809  T
Q  161 gccaaataaca 171  Q
    | |||||||||    
T  23611810 gtcaaataaca 23611820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 21882759 - 21882840
Alignment:
Q  90 aagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataaca 171  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||| || ||||||||| |||||||||    
T  21882759 aagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccggcaaataaca 21882840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 22631609 - 22631517
Alignment:
Q  79 caaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataaca 171  Q
    |||| |||||||||||||||||||||| ||||||| | |||||| ||||||||||||||| |||||| || |  ||||||||| |||||||||    
T  22631609 caaactttatcaagaaaatttcaagacggtgtattagctaacacctttccttaattacacactattatctcctttgatttccgacaaataaca 22631517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 1985128 - 1985043
Alignment:
Q  86 tatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataaca 171  Q
    |||||||||||||| ||||  ||||||||| |||||| ||||||||||||||  | |||||||||| ||||||||| |||||||||    
T  1985128 tatcaagaaaattttaagatagtgtatttgctaacacatttccttaattacataccattaccttccttgatttccggcaaataaca 1985043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 20125737 - 20125660
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacac 138  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||| ||| || |||| ||||||||||    
T  20125737 aaatgatagatacaatgacaaattttatcaagaaaatttgaagacagtgtatttgctaatacctttctttaattacac 20125660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 19511557 - 19511473
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctatta 145  Q
    ||||||||||| |||||| ||| |||||||| |||||||| |||| |||||||| ||||||| ||||||||||||| | ||||||    
T  19511557 aaatgatagatgcagtgataaattttatcaaaaaaatttcgagacagtgtatttattaacacctttccttaattactcactatta 19511473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 8123838 - 8123764
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaatta 135  Q
    |||||||||||| ||| ||||||| |||| ||||||||| | ||| || |||||| |||||| |||| |||||||    
T  8123838 aaatgatagatatagtaacaaaatgtatccagaaaattttaggacggtatatttgctaacacctttctttaatta 8123764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 23730507 - 23730573
Alignment:
Q  102 agaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttccgccaaataac 170  Q
    |||| |||||||||||||||| ||||||||||||||  | |||||||  | ||||||||| ||||||||    
T  23730507 agacagtgtatttgttaacacctttccttaattaca--ccattacctctcttgatttccgacaaataac 23730573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 15127548 - 15127604
Alignment:
Q  58 ggaaaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtattt 114  Q
    ||||| ||||| ||| |||||||| || |||||||||||||| ||||| ||||||||    
T  15127548 ggaaattgataaatatagtgacaagatgtatcaagaaaattttaagacagtgtattt 15127604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 19337 - 19227
Alignment:
Q  61 aaatgatagatacagtgacaaaatttatcaagaaaatttcaagaccgtgtatttgttaacacttttccttaattacactctattaccttccatgatttcc 160  Q
    ||||||||||||  ||||  |||||||| |||||||||| ||| | ||||||||||||| || |||  ||||  |||| ||||||||| |  ||||||||    
T  19337 aaatgatagatattgtgatcaaatttattaagaaaattttaagtctgtgtatttgttaatacctttttttaacgacacactattacctcctttgatttcc 19238  T
Q  161 gccaaataaca 171  Q
    | |||||||||    
T  19237 gtcaaataaca 19227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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