View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10491_high_1 (Length: 438)
Name: NF10491_high_1
Description: NF10491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10491_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 40338708 - 40338417
Alignment:
| Q |
15 |
gttggtacatattgtcgtatactatagcactgnnnnnnnccctcttattttggtgaataacattgatgttaac-tatgtaattggttttgctaacgagtg |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |
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| T |
40338708 |
gttggtacatattgtcgtatactatagcactgtttttt-ccctcttattttggtgaataacattgatgtttatgtatgtatttggttttgctaacgagtg |
40338610 |
T |
|
| Q |
114 |
ttctcatatgactctttaattgatcacgacatataaaaggggttactgttggattaggaaaacacaagcttaggagaatggcagaggtgaaactacatgg |
213 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40338609 |
ttctcatatgactctttgattgatcacgacatataaaaggggttactgttggattgggaaaacacaagcttaggagaatggcagaggtgaaactacatgg |
40338510 |
T |
|
| Q |
214 |
attttggtatagtccttttactttaagggttgtatggaccctaaatttgaaaggtataccatatgagaccatagaggaagatcgtttcaataa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40338509 |
attttggtatagtccttttactttaagggttgtatggaccctaaatttgaaaggtataccatatgagaacatagaggaagatcgtttcaataa |
40338417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 303 - 431
Target Start/End: Complemental strand, 40338396 - 40338268
Alignment:
| Q |
303 |
ataaccccgtacgcaagaatactccagtgttagttcatgatgaaaaaccaatatgtgagtctatgatcattgttgaatacattgatgagatatggtcaca |
402 |
Q |
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||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40338396 |
ataaccccgtacgcaagaatactccagtgctgattcacgatgaaaaaccaatatgtgagtctatgatcattgttgaatacattgatgagatatggccaca |
40338297 |
T |
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| Q |
403 |
caactcattgcttccttctcatccctatg |
431 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
40338296 |
caactcattgcttccttctcatccctatg |
40338268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 145 - 306
Target Start/End: Complemental strand, 40343759 - 40343601
Alignment:
| Q |
145 |
tataaaaggggttactgttggattaggaaaacacaagcttaggagaatggcagaggtgaaactacatggattttggtatagtccttttactttaagggtt |
244 |
Q |
| |
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||||||||||||| ||| | |||||| |||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40343759 |
tataaaaggggttcatgtcagtttaggataacacaagtttagcagaatgac---ggtgaaactacatggattttggtatagtccttttactttaagggtt |
40343663 |
T |
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| Q |
245 |
gtatggaccctaaatttgaaaggtataccatatgagaccatagaggaagatcgtttcaataa |
306 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||| |||||||||| |||| |||||||| |
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| T |
40343662 |
gtatggaccttaaatttgaagggtataccatatgagaacatagaggaatatcgcttcaataa |
40343601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 316 - 431
Target Start/End: Complemental strand, 40343567 - 40343452
Alignment:
| Q |
316 |
caagaatactccagtgttagttcatgatgaaaaaccaatatgtgagtctatgatcattgttgaatacattgatgagatatggtcacacaactcattgctt |
415 |
Q |
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|||||| ||||||||| || ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40343567 |
caagaagactccagtgctaattcatgatggaaaaccaatatgtgagtccatgatcattgttgaatacattgatgagatatggccacacaactcattgctt |
40343468 |
T |
|
| Q |
416 |
ccttctcatccctatg |
431 |
Q |
| |
|
||| || |||| |||| |
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| T |
40343467 |
cctgctgatccttatg |
40343452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 191 - 306
Target Start/End: Complemental strand, 40326186 - 40326071
Alignment:
| Q |
191 |
atggcagaggtgaaactacatggattttggtatagtccttttactttaagggttgtatggaccctaaatttgaaaggtataccatatgagaccatagagg |
290 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||| | ||| | || |||||||||||||||| |||||||| |
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| T |
40326186 |
atggcagaggtgaaactacacggattttggtatagtccttatactttgagggtagtatggaccttgaatctaaagggtataccatatgagaacatagagg |
40326087 |
T |
|
| Q |
291 |
aagatcgtttcaataa |
306 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
40326086 |
aagatcgtttcaataa |
40326071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 303 - 431
Target Start/End: Complemental strand, 40326050 - 40325922
Alignment:
| Q |
303 |
ataaccccgtacgcaagaatactccagtgttagttcatgatgaaaaaccaatatgtgagtctatgatcattgttgaatacattgatgagatatggtcaca |
402 |
Q |
| |
|
||||||| ||| |||||| ||||||||||| |||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
40326050 |
ataacccaatacacaagaagactccagtgttggttcatgatggaaaacccatatgcgagtcaatgatcattgttgaatacattgatgagatatggccaca |
40325951 |
T |
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| Q |
403 |
caactcattgcttccttctcatccctatg |
431 |
Q |
| |
|
||| ||||||||||| || |||| |||| |
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| T |
40325950 |
aaacacattgcttcctgctgatccttatg |
40325922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 323 - 434
Target Start/End: Complemental strand, 40331247 - 40331136
Alignment:
| Q |
323 |
actccagtgttagttcatgatgaaaaaccaatatgtgagtctatgatcattgttgaatacattgatgagatatggtcacacaactcattgcttccttctc |
422 |
Q |
| |
|
||||||||| | |||||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |||| || |||||||||||| || |
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| T |
40331247 |
actccagtgctggttcatgatggaaaacccatatgtgagtccatgattattgttgaatacattgatgagatatggccacaaaattcattgcttcctgctg |
40331148 |
T |
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| Q |
423 |
atccctatgcta |
434 |
Q |
| |
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|||| ||||||| |
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| T |
40331147 |
atccttatgcta |
40331136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 191 - 305
Target Start/End: Complemental strand, 40331403 - 40331289
Alignment:
| Q |
191 |
atggcagaggtgaaactacatggattttggtatagtccttttactttaagggttgtatggaccctaaatttgaaaggtataccatatgagaccatagagg |
290 |
Q |
| |
|
||||||||| | ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||| ||||| | ||||| | |
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| T |
40331403 |
atggcagagataaaactacatggatcttggtatagtcctttcactttaagggtggtatggaccctaaatctgaagggtataccgtatgatagtatagaag |
40331304 |
T |
|
| Q |
291 |
aagatcgtttcaata |
305 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
40331303 |
aagatcacttcaata |
40331289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 51864716 - 51864757
Alignment:
| Q |
191 |
atggcagaggtgaaactacatggattttggtatagtcctttt |
232 |
Q |
| |
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|||||||| |||||||||| ||||||||||| |||||||||| |
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|
| T |
51864716 |
atggcagatgtgaaactacttggattttggtctagtcctttt |
51864757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 22039572 - 22039668
Alignment:
| Q |
207 |
tacatggattttggtatagtccttttactttaagggttgtatggaccctaaatttgaaaggtataccatatgagaccatagaggaagatcgtttcaa |
303 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| |||||| || | ||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
22039572 |
tacatggattttggtacagtccttttactttaagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaggaagatcgtttcaa |
22039668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 316 - 402
Target Start/End: Original strand, 22039705 - 22039791
Alignment:
| Q |
316 |
caagaatactccagtgttagttcatgatgaaaaaccaatatgtgagtctatgatcattgttgaatacattgatgagatatggtcaca |
402 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
22039705 |
caagaaaactccagtgttggttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccaca |
22039791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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