View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10491_low_2 (Length: 324)

Name: NF10491_low_2
Description: NF10491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10491_low_2
NF10491_low_2
[»] scaffold0341 (2 HSPs)
scaffold0341 (28-324)||(1062-1358)
scaffold0341 (28-324)||(8716-9012)
[»] chr1 (11 HSPs)
chr1 (28-324)||(6507037-6507333)
chr1 (13-324)||(6512923-6513234)
chr1 (28-324)||(6521402-6521698)
chr1 (29-324)||(6517338-6517633)
chr1 (47-204)||(47713341-47713498)
chr1 (46-204)||(47745923-47746081)
chr1 (46-204)||(47760255-47760413)
chr1 (47-204)||(47718135-47718292)
chr1 (111-230)||(6500291-6500410)
chr1 (111-207)||(47777837-47777933)
chr1 (53-208)||(6523520-6523675)
[»] chr5 (3 HSPs)
chr5 (38-205)||(28831385-28831552)
chr5 (116-204)||(28856659-28856747)
chr5 (116-204)||(28861936-28862024)
[»] chr7 (1 HSPs)
chr7 (68-114)||(704378-704424)


Alignment Details
Target: scaffold0341 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 28 - 324
Target Start/End: Original strand, 1062 - 1358
Alignment:
28 gcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtag 127  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
1062 gcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtag 1161  T
128 ttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttaccaccatcgttaccttgatcac 227  Q
    || ||||||||||||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||    
1162 ttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccatcatcgttaccttgatcac 1261  T
228 aaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgagatgtgaaaatgaagatgagaaggagagaacaaagaaatgaagacat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
1262 aaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgagatgtgaaaatgaatgtgagaaggagagaacaaagaaatgaagacat 1358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 28 - 324
Target Start/End: Original strand, 8716 - 9012
Alignment:
28 gcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtag 127  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
8716 gcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtag 8815  T
128 ttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttaccaccatcgttaccttgatcac 227  Q
    || ||||||||||||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||    
8816 ttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccatcatcgttaccttgatcac 8915  T
228 aaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgagatgtgaaaatgaagatgagaaggagagaacaaagaaatgaagacat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
8916 aaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgagatgtgaaaatgaatgtgagaaggagagaacaaagaaatgaagacat 9012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 28 - 324
Target Start/End: Original strand, 6507037 - 6507333
Alignment:
28 gcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtag 127  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
6507037 gcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtag 6507136  T
128 ttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttaccaccatcgttaccttgatcac 227  Q
    || ||||||||||||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||    
6507137 ttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccatcatcgttaccttgatcac 6507236  T
228 aaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgagatgtgaaaatgaagatgagaaggagagaacaaagaaatgaagacat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
6507237 aaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgagatgtgaaaatgaatgtgagaaggagagaacaaagaaatgaagacat 6507333  T

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Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 6512923 - 6513234
Alignment:
13 agatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6512923 agatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaa 6513022  T
113 ttatagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttaccaccat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6513023 ttatagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttaccaccat 6513122  T
213 cgttaccttgatcacaaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgagatgtgaaaatgaagatgagaaggagagaacaaag 312  Q
    |||||  ||||||||| | |||| | |||||      |  || | || | |||||| ||| |||||||||||||||||| |||||||||| |||||||||    
6513123 cgttattttgatcacagaagtattgcaatttgttatcattgttaatgttggctgtggtgagttgagatgtgaaaatgaatatgagaaggaaagaacaaag 6513222  T
313 aaatgaagacat 324  Q
    ||||||||||||    
6513223 aaatgaagacat 6513234  T

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Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 28 - 324
Target Start/End: Complemental strand, 6521698 - 6521402
Alignment:
28 gcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtag 127  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||  |||||||||||||||||||||||||||||    
6521698 gcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgtttccataagaggaattatagaaaccgtag 6521599  T
128 ttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttaccaccatcgttaccttgatcac 227  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||| ||||||||||||||| |||  ||||||||    
6521598 ttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgtttgttgggtagttaccaccatcattattttgatcac 6521499  T
228 aaatgtatcggaattttcctgtagcgtcagtggtagctgtgctgatttgagatgtgaaaatgaagatgagaaggagagaacaaagaaatgaagacat 324  Q
    | | |||| |||||||   || || ||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
6521498 agaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaatgaaaatgagaaggagagaacaaagaaatgaagacat 6521402  T

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Target: chr1; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 6517338 - 6517633
Alignment:
29 caattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagt 128  Q
    |||||| |||||||||| ||||| | ||||||||| || |||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||    
6517338 caatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagt 6517437  T
129 tgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttaccaccatcgttaccttgatcaca 228  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||  |||||||||    
6517438 tgatttctttgttggaagtgagaatggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagataccaccatcgttattttgatcaca 6517537  T
229 aatgtatcggaattttcctgtagc---gtcagtggtagctgtgctgatttgagatgtgaaaatgaagatgagaaggagagaacaaagaaatgaagacat 324  Q
     | |||| |||| ||  || || |   ||||  |   |||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
6517538 gaagtattggaaatt--ct-taccttggtcaacgtctgctgtggtgagttgagatgtgaaaatgaaaatgagaaggagagaacaaagaaatgaagacat 6517633  T

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Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 47713341 - 47713498
Alignment:
47 ggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaag 146  Q
    ||||| ||||||||||| || |||||||| |||||||||||||||||||||   ||||||||| |||| ||||||||||||||||| |   |||||||||    
47713341 ggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaag 47713440  T
147 tgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagtt 204  Q
    ||||| |||||| ||||||||| ||||| || ||||||||||| |||| |||||||||    
47713441 tgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagtt 47713498  T

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Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 47745923 - 47746081
Alignment:
46 gggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaa 145  Q
    |||||| ||||||||||| || |||||||| ||||||||||| || ||||||   ||||||||| |||| ||||||||||||||||| |   ||||||||    
47745923 gggtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaa 47746022  T
146 gtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagtt 204  Q
    |||||| |||||| ||||||||| ||||| || ||||||||||| |||| |||||||||    
47746023 gtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagtt 47746081  T

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Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 47760255 - 47760413
Alignment:
46 gggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaa 145  Q
    |||||| |||||||||||||| |||||||| |||||||||||||| ||||||   ||||||||   ||| ||||||||||||||||| |||  |||||||    
47760255 gggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgtagaaaccgtagttgatttctgcgttggaa 47760354  T
146 gtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagtt 204  Q
    || ||| |||| | || |||||| ||||| || ||||||||||| |||| |||||||||    
47760355 gttagattggacaaaacggtgttgaggttgttttgataggtgctattggctgtgtagtt 47760413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 47718135 - 47718292
Alignment:
47 ggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaag 146  Q
    ||||| ||||||||||| || || ||||  |||||||||||||| ||||||   ||||||||| |||| ||||||||||||||||| ||| |||||||||    
47718135 ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgatttctgtgttggaag 47718234  T
147 tgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagtt 204  Q
    | ||| |||| | ||||||| | ||||| || ||||||||||| |||| |||||||||    
47718235 ttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtgtagtt 47718292  T

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Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 6500291 - 6500410
Alignment:
111 aattatagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttaccacc 210  Q
    |||| ||||||||||||||||| ||| |||||||||||||||| |||| ||| ||||| |||||||||| ||||||||| || |||||||||||||| |     
6500291 aattgtagaaaccgtagttgatttctgtgttggaagtgagagttgataaaagtgtgttgaggtttttgtcataggtgctatttgttgtgtagttacctct 6500390  T
211 atcgttaccttgatcacaaa 230  Q
    || |||  ||||||||||||    
6500391 attgttgtcttgatcacaaa 6500410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 47777933 - 47777837
Alignment:
111 aattatagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttacc 207  Q
    |||| ||||||||||| ||||| | | |||||||| |||||||||||| ||| ||||| |||||| | |  ||||||||||| ||||||||||||||    
47777933 aattgtagaaaccgtaattgatttgtgtgttggaaatgagagtggataaaagtgtgttgaggtttgtttcgtaggtgctgtttgttgtgtagttacc 47777837  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 6523675 - 6523520
Alignment:
53 acatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagag 152  Q
    ||||| ||||| ||||| ||||| |||||||||||||  ||||||   || |  ||| |||| ||||||||||||||||| |   |||||||||||||||    
6523675 acatcgcctctgcaaagaccaattgcgtttactttgtttgtgttttcaccgtttgagaaattgtagaaaccgtagttgatttgcgtgttggaagtgagag 6523576  T
153 tggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttacca 208  Q
    |||| ||||| |  ||||||||| | || ||| | ||||||| ||||||| |||||    
6523575 tggacagaagtgatttaaggtttgtttggtagatactgttggctgtgtaggtacca 6523520  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 28831385 - 28831552
Alignment:
38 caatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctt 137  Q
    |||||||| || || |||||||||||||| | ||| || |||| |||||||| | ||  | | || || ||| | || |||||||||||| |||| |||     
28831385 caatcatttggattaacatctcctctacataatcctatggcgtatactttgttgttgcctttgccgtatgagaagttgtagaaaccgtaggtgatttctg 28831484  T
138 tgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagtta 205  Q
    |||||||||| ||||| |||| ||| ||||| |||||||  ||||| ||||||||  |||||||||||    
28831485 tgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgctgttttttgtgtagtta 28831552  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 28856659 - 28856747
Alignment:
116 tagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagtt 204  Q
    |||||||||||| |||| ||| |||||||||| ||||| |||| ||| ||||| |||||||  ||||| ||||||||  ||||||||||    
28856659 tagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgctgttttttgtgtagtt 28856747  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 28861936 - 28862024
Alignment:
116 tagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagtt 204  Q
    |||||||||||| |||| ||| |||||||||| ||||| |||| ||| ||||| |||||||  ||||| ||||||||  ||||||||||    
28861936 tagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgctgttttttgtgtagtt 28862024  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 704424 - 704378
Alignment:
68 agtccaatagcgtttactttgtcggtgtttattccataagaggaatt 114  Q
    ||||||||||||||||||||||| ||||||||  ||||||| |||||    
704424 agtccaatagcgtttactttgtcagtgtttatgtcataagatgaatt 704378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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