View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10492_high_1 (Length: 478)

Name: NF10492_high_1
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10492_high_1
NF10492_high_1
[»] chr6 (60 HSPs)
chr6 (245-478)||(5398229-5398459)
chr6 (70-325)||(5351703-5351957)
chr6 (202-476)||(5439196-5439479)
chr6 (370-478)||(5156017-5156125)
chr6 (173-325)||(5135751-5135911)
chr6 (370-478)||(5372280-5372388)
chr6 (109-187)||(5334562-5334640)
chr6 (70-182)||(5100512-5100625)
chr6 (173-325)||(5100650-5100810)
chr6 (366-478)||(2939098-2939210)
chr6 (366-478)||(5177922-5178034)
chr6 (366-478)||(5279747-5279859)
chr6 (366-478)||(5688903-5689015)
chr6 (245-478)||(5180644-5180886)
chr6 (70-180)||(5398510-5398615)
chr6 (1-71)||(5334630-5334700)
chr6 (70-182)||(5135613-5135726)
chr6 (236-348)||(5352691-5352803)
chr6 (70-195)||(5242145-5242270)
chr6 (366-476)||(5351585-5351695)
chr6 (366-475)||(5242512-5242621)
chr6 (245-472)||(5255984-5256220)
chr6 (366-476)||(5346214-5346324)
chr6 (366-470)||(5098402-5098506)
chr6 (389-478)||(5334368-5334457)
chr6 (366-463)||(23127310-23127407)
chr6 (257-476)||(5448794-5449022)
chr6 (106-212)||(5687556-5687661)
chr6 (370-468)||(5100822-5100920)
chr6 (370-468)||(5135923-5136021)
chr6 (366-472)||(5283224-5283330)
chr6 (366-476)||(5065449-5065559)
chr6 (366-476)||(5126629-5126739)
chr6 (366-476)||(5352863-5352973)
chr6 (366-464)||(5427097-5427195)
chr6 (261-368)||(5155866-5155973)
chr6 (255-356)||(5242360-5242459)
chr6 (376-463)||(5072692-5072779)
chr6 (150-195)||(5255884-5255930)
chr6 (367-476)||(5253718-5253827)
chr6 (370-425)||(2657155-2657210)
chr6 (128-193)||(5155768-5155832)
chr6 (20-63)||(13114393-13114436)
chr6 (366-476)||(5124443-5124553)
chr6 (137-183)||(23127164-23127210)
chr6 (19-59)||(10344049-10344089)
chr6 (137-195)||(5180539-5180598)
chr6 (19-58)||(29942461-29942500)
chr6 (19-57)||(14585348-14585386)
chr6 (20-61)||(3593591-3593632)
chr6 (260-305)||(5334453-5334498)
chr6 (1-58)||(8237976-8238033)
chr6 (23-60)||(14328668-14328705)
chr6 (23-60)||(14421678-14421715)
chr6 (28-61)||(24387788-24387821)
chr6 (1-58)||(31851758-31851815)
chr6 (245-289)||(5283109-5283153)
chr6 (20-56)||(13114644-13114680)
chr6 (19-59)||(13639508-13639548)
chr6 (14-46)||(26141486-26141518)
[»] chr3 (42 HSPs)
chr3 (366-476)||(47985393-47985503)
chr3 (366-476)||(48003967-48004077)
chr3 (366-476)||(47994680-47994790)
chr3 (366-476)||(48013252-48013362)
chr3 (81-195)||(47985062-47985177)
chr3 (81-195)||(47994349-47994464)
chr3 (81-195)||(48003636-48003751)
chr3 (81-195)||(48012921-48013036)
chr3 (245-313)||(47985230-47985298)
chr3 (245-313)||(47994517-47994585)
chr3 (245-313)||(48003804-48003872)
chr3 (245-313)||(48013089-48013157)
chr3 (18-58)||(27497799-27497839)
chr3 (1-61)||(47115562-47115622)
chr3 (1-60)||(49880737-49880796)
chr3 (1-58)||(5205116-5205174)
chr3 (1-58)||(5205354-5205412)
chr3 (1-61)||(7118084-7118145)
chr3 (14-55)||(8827438-8827479)
chr3 (1-46)||(35460657-35460702)
chr3 (1-58)||(36867857-36867914)
chr3 (1-58)||(49872950-49873006)
chr3 (18-58)||(6510215-6510255)
chr3 (18-58)||(20737510-20737550)
chr3 (1-57)||(29313789-29313845)
chr3 (3-58)||(34314848-34314904)
chr3 (14-58)||(37050018-37050062)
chr3 (1-56)||(14154782-14154836)
chr3 (18-68)||(14248831-14248881)
chr3 (18-56)||(22949248-22949286)
chr3 (1-58)||(30586162-30586220)
chr3 (20-58)||(48044747-48044785)
chr3 (20-58)||(51460782-51460820)
chr3 (18-55)||(5417283-5417320)
chr3 (1-58)||(14241214-14241271)
chr3 (18-63)||(23626254-23626299)
chr3 (20-61)||(26769918-26769959)
chr3 (23-60)||(54567765-54567802)
chr3 (5-60)||(3526537-3526593)
chr3 (1-41)||(13041380-13041420)
chr3 (1-41)||(13049457-13049497)
chr3 (28-64)||(38344412-38344448)
[»] chr7 (30 HSPs)
chr7 (387-476)||(36212942-36213031)
chr7 (1-61)||(38193194-38193254)
chr7 (19-62)||(19979647-19979690)
chr7 (1-57)||(13797611-13797667)
chr7 (19-58)||(24555919-24555958)
chr7 (18-61)||(39580183-39580226)
chr7 (1-59)||(3951602-3951660)
chr7 (20-61)||(13279436-13279477)
chr7 (20-57)||(21298015-21298052)
chr7 (18-63)||(31534176-31534221)
chr7 (1-60)||(5864442-5864502)
chr7 (14-58)||(6269528-6269572)
chr7 (14-58)||(32946286-32946330)
chr7 (2-58)||(35158501-35158557)
chr7 (18-61)||(3307693-3307736)
chr7 (20-59)||(23371448-23371487)
chr7 (1-59)||(5766637-5766695)
chr7 (19-61)||(5909710-5909752)
chr7 (1-58)||(13797416-13797474)
chr7 (20-58)||(19272468-19272506)
chr7 (1-58)||(20041135-20041193)
chr7 (1-55)||(39065386-39065439)
chr7 (20-58)||(48945184-48945222)
chr7 (1-58)||(9915651-9915707)
chr7 (1-58)||(9923563-9923619)
chr7 (1-58)||(12005264-12005321)
chr7 (21-58)||(23784584-23784621)
chr7 (1-58)||(24478024-24478080)
chr7 (1-61)||(2300819-2300879)
chr7 (20-60)||(48104747-48104787)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-59)||(1826-1884)
[»] chr4 (32 HSPs)
chr4 (411-464)||(25569037-25569090)
chr4 (1-58)||(24215741-24215798)
chr4 (1-58)||(32682489-32682546)
chr4 (14-58)||(37273408-37273452)
chr4 (19-58)||(50727590-50727629)
chr4 (19-58)||(50735604-50735643)
chr4 (20-58)||(22272930-22272968)
chr4 (1-58)||(11563517-11563574)
chr4 (1-58)||(16493518-16493575)
chr4 (366-472)||(4132618-4132721)
chr4 (18-58)||(20125435-20125475)
chr4 (1-61)||(21798566-21798625)
chr4 (1-57)||(27579744-27579800)
chr4 (18-58)||(35539797-35539837)
chr4 (1-61)||(49300734-49300794)
chr4 (20-59)||(550672-550711)
chr4 (366-461)||(4122644-4122739)
chr4 (9-56)||(27579516-27579563)
chr4 (19-58)||(51396159-51396198)
chr4 (366-472)||(7884155-7884261)
chr4 (28-58)||(9001444-9001474)
chr4 (1-58)||(18454192-18454250)
chr4 (14-60)||(20125216-20125262)
chr4 (20-58)||(21780122-21780160)
chr4 (1-59)||(46094240-46094298)
chr4 (20-58)||(50138488-50138526)
chr4 (1-58)||(31226499-31226556)
chr4 (18-59)||(51965371-51965412)
chr4 (18-58)||(2032748-2032788)
chr4 (14-58)||(18509983-18510027)
chr4 (18-58)||(29104159-29104199)
chr4 (18-58)||(50773621-50773661)
[»] scaffold0142 (1 HSPs)
scaffold0142 (1-60)||(34827-34885)
[»] chr2 (31 HSPs)
chr2 (1-59)||(28149667-28149724)
chr2 (1-58)||(17328092-17328149)
chr2 (1-58)||(34635706-34635763)
chr2 (1-58)||(38128079-38128136)
chr2 (18-58)||(6468058-6468098)
chr2 (397-460)||(22583333-22583396)
chr2 (1-56)||(32449689-32449744)
chr2 (20-58)||(3364580-3364618)
chr2 (1-59)||(19641445-19641503)
chr2 (1-59)||(19840038-19840096)
chr2 (20-61)||(29835099-29835140)
chr2 (18-58)||(37147551-37147591)
chr2 (1-57)||(38210865-38210921)
chr2 (19-58)||(19052191-19052230)
chr2 (18-61)||(20182511-20182554)
chr2 (20-59)||(22846012-22846051)
chr2 (7-58)||(27866194-27866245)
chr2 (18-57)||(38385936-38385975)
chr2 (20-58)||(776611-776649)
chr2 (20-58)||(3364327-3364365)
chr2 (20-58)||(19493467-19493505)
chr2 (20-58)||(20182264-20182302)
chr2 (20-58)||(22116155-22116193)
chr2 (19-61)||(43301877-43301919)
chr2 (20-58)||(45464630-45464668)
chr2 (1-58)||(758745-758802)
chr2 (18-58)||(18555576-18555617)
chr2 (19-56)||(30371614-30371651)
chr2 (20-61)||(33641129-33641170)
chr2 (1-58)||(38127763-38127820)
chr2 (19-55)||(29098022-29098058)
[»] scaffold0769 (1 HSPs)
scaffold0769 (1-58)||(4151-4208)
[»] chr8 (28 HSPs)
chr8 (1-58)||(12936167-12936224)
chr8 (1-58)||(29309565-29309622)
chr8 (18-58)||(4482045-4482085)
chr8 (18-58)||(29309791-29309831)
chr8 (20-68)||(43945159-43945207)
chr8 (18-61)||(27543642-27543685)
chr8 (20-58)||(39451505-39451543)
chr8 (18-59)||(960514-960555)
chr8 (7-58)||(24970963-24971015)
chr8 (18-58)||(25277723-25277763)
chr8 (20-63)||(2873784-2873827)
chr8 (20-58)||(4482299-4482338)
chr8 (11-58)||(6952912-6952959)
chr8 (1-59)||(32684560-32684619)
chr8 (19-58)||(34985340-34985379)
chr8 (19-58)||(43400671-43400710)
chr8 (26-64)||(1600071-1600109)
chr8 (20-58)||(14329619-14329657)
chr8 (19-61)||(29726103-29726145)
chr8 (18-56)||(40652621-40652659)
chr8 (1-58)||(12330333-12330390)
chr8 (1-61)||(25277469-25277530)
chr8 (1-58)||(34227327-34227384)
chr8 (1-58)||(38711940-38711997)
chr8 (1-57)||(8315983-8316038)
chr8 (18-58)||(9513828-9513868)
chr8 (20-60)||(16009865-16009904)
chr8 (1-41)||(18367260-18367300)
[»] chr5 (26 HSPs)
chr5 (1-58)||(11721584-11721641)
chr5 (7-58)||(29104444-29104495)
chr5 (1-58)||(22642322-22642380)
chr5 (1-58)||(10976748-10976804)
chr5 (18-62)||(2870901-2870945)
chr5 (1-60)||(12399586-12399645)
chr5 (20-63)||(12823732-12823775)
chr5 (20-58)||(22551522-22551560)
chr5 (1-59)||(36992983-36993041)
chr5 (1-62)||(39418951-39419013)
chr5 (1-58)||(12148226-12148283)
chr5 (1-61)||(16504716-16504777)
chr5 (1-58)||(17886021-17886078)
chr5 (1-58)||(21039865-21039922)
chr5 (5-61)||(26524624-26524681)
chr5 (20-61)||(30916480-30916521)
chr5 (19-63)||(31861744-31861789)
chr5 (1-57)||(33658871-33658928)
chr5 (18-59)||(34648727-34648768)
chr5 (18-58)||(4413927-4413967)
chr5 (18-58)||(8855699-8855739)
chr5 (1-68)||(11721255-11721323)
chr5 (18-58)||(31861491-31861531)
chr5 (1-61)||(31920057-31920117)
chr5 (23-59)||(34407915-34407951)
chr5 (1-41)||(41123161-41123201)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-61)||(63349-63409)
[»] chr1 (32 HSPs)
chr1 (1-61)||(5330417-5330477)
chr1 (23-61)||(51470126-51470164)
chr1 (1-58)||(5932280-5932337)
chr1 (1-58)||(13545579-13545636)
chr1 (1-58)||(22604662-22604719)
chr1 (1-58)||(24987608-24987664)
chr1 (7-60)||(35034301-35034354)
chr1 (19-64)||(47021831-47021876)
chr1 (1-61)||(5348160-5348220)
chr1 (20-60)||(7112492-7112532)
chr1 (18-58)||(18458819-18458859)
chr1 (1-61)||(44826078-44826138)
chr1 (19-58)||(10027995-10028034)
chr1 (19-58)||(30659426-30659465)
chr1 (1-60)||(42736822-42736880)
chr1 (20-58)||(4646757-4646795)
chr1 (19-57)||(7112739-7112777)
chr1 (20-58)||(47022088-47022126)
chr1 (20-61)||(15336372-15336413)
chr1 (1-58)||(16698869-16698926)
chr1 (19-56)||(21853418-21853455)
chr1 (20-57)||(27265704-27265741)
chr1 (1-58)||(28797361-28797418)
chr1 (20-61)||(46136083-46136124)
chr1 (20-57)||(47220913-47220950)
chr1 (19-55)||(2059444-2059480)
chr1 (26-58)||(8928815-8928847)
chr1 (1-45)||(13738462-13738506)
chr1 (1-61)||(21853557-21853617)
chr1 (20-64)||(28410908-28410952)
chr1 (20-52)||(29018615-29018647)
chr1 (17-45)||(40091720-40091748)
[»] scaffold1476 (2 HSPs)
scaffold1476 (397-460)||(43-106)
scaffold1476 (211-250)||(189-228)
[»] scaffold0384 (1 HSPs)
scaffold0384 (20-63)||(4446-4489)
[»] scaffold0095 (1 HSPs)
scaffold0095 (20-58)||(10355-10393)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-58)||(91050-91106)
[»] scaffold0294 (1 HSPs)
scaffold0294 (367-463)||(7878-7974)
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-57)||(44392-44447)
[»] scaffold0010 (1 HSPs)
scaffold0010 (20-60)||(26306-26346)
[»] scaffold0450 (2 HSPs)
scaffold0450 (19-58)||(7859-7898)
scaffold0450 (19-63)||(8113-8157)
[»] scaffold0740 (1 HSPs)
scaffold0740 (1-59)||(3646-3703)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 60)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 245 - 478
Target Start/End: Complemental strand, 5398459 - 5398229
Alignment:
Q  245 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatc 344  Q
    ||||||||| |||  ||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||     
T  5398459 ttcattcaactcggcttttcttctttcttttctgattgaagtcatcagtgggctcatcttcagtagagaatctcttgacagggcgttcattttcatcat- 5398361  T
Q  345 actacaagtaattgtattcaaatcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttacca 444  Q
      |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||| ||||||||||||    
T  5398360 --tacaagcaattgcattcaaatcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttacca 5398263  T
Q  445 ggttctatacttgatactaccctctgcccctctt 478  Q
    ||||||||||||||||||||||| ||||||||||    
T  5398262 ggttctatacttgatactaccctttgcccctctt 5398229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 70 - 325
Target Start/End: Complemental strand, 5351957 - 5351703
Alignment:
Q  70 ttaaatggtacatgacatggaagaattgtagcagaccaaattagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaac 169  Q
    |||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  5351957 ttaaatagtacatgacatggaacaattgtaacagaacaaattagaatctttcaccactctttgtgaata-aaaaattcaacatggataaaatcaagaaac 5351859  T
Q  170 ttcagccaaaaatggaaa-caattgttagcggtcaccataagaattgatttttgctcggccattgttttacaatctttcattcaattcgatttttcttct 268  Q
    | |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||||||| ||||| |||||||| || | ||  ||||||||||    
T  5351858 tacagccaaaaatggaaaacaattgttagccgtcaccataa-aattgatttttgctccgccattgctttactatctttcaatccactcagtttttcttct 5351760  T
Q  269 ttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacag 325  Q
    ||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||    
T  5351759 ttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttgacag 5351703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 202 - 476
Target Start/End: Complemental strand, 5439479 - 5439196
Alignment:
Q  202 caccataagaattgatttttgctcggccattgttttacaatctttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcct 301  Q
    |||||||||||||||| ||| |   ||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  5439479 caccataagaattgatgtttaccaagccattgttttaccatttttcattccattcgatttttcttctttctgttccgattgaagtcatcagtgggctcct 5439380  T
Q  302 cttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagtaattgtattcaa---------atcatatacaagataaactgttgtctt 392  Q
    || ||||||||||||||||  |||||||||| |||||||||   |||| || ||  | ||||||         ||||||||| |||||| ||| ||||||    
T  5439379 ctccagtagagaatctcttagcagggcgttcattttcatcacatctactagcaacggcattcaaattttgtgcatcatatacgagataagctgctgtctt 5439280  T
Q  393 cttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctc 476  Q
     ||  |||||||||||||||  |||||||||  ||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  5439279 tttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgattttaacctctgcccctc 5439196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 370 - 478
Target Start/End: Original strand, 5156017 - 5156125
Alignment:
Q  370 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctct 469  Q
    ||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  5156017 tatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct 5156116  T
Q  470 gcccctctt 478  Q
    |||||||||    
T  5156117 gcccctctt 5156125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 173 - 325
Target Start/End: Original strand, 5135751 - 5135911
Alignment:
Q  173 agccaaaaatggaaa-caattgttagcggtcaccataagaattgatttttgctcggccattgttttacaatctt--------tcattcaattcgattttt 263  Q
    ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||| ||||| |||||        |||||| | ||| |||||    
T  5135751 agccaaaaatggaaaacaattgttagcagtcatcataa-aattgatttttgctcggccattgctttactatcttccattgattcattccactcggttttt 5135849  T
Q  264 cttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacag 325  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  5135850 cttctttctgttctgattgaagtcatcattgggctcctcttcagtagagaatctcttgacag 5135911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 370 - 478
Target Start/End: Complemental strand, 5372388 - 5372280
Alignment:
Q  370 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctct 469  Q
    ||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  5372388 tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgatactaccctct 5372289  T
Q  470 gcccctctt 478  Q
    |||||||||    
T  5372288 gcccctctt 5372280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 5334640 - 5334562
Alignment:
Q  109 attagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaaatggaaa 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5334640 attagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaaatggaaa 5334562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 5100512 - 5100625
Alignment:
Q  70 ttaaatggtacatgacatggaagaattgtagcagaccaaattagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaac 169  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  5100512 ttaaatggtatatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcaccaaggataaaatctagaaac 5100611  T
Q  170 ttcag-ccaaaaat 182  Q
    | ||| ||||||||    
T  5100612 tacagaccaaaaat 5100625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 173 - 325
Target Start/End: Original strand, 5100650 - 5100810
Alignment:
Q  173 agccaaaaatggaaa-caattgttagcggtcaccataagaattgatttttgctcggccattgttttacaatctttcattcaat--------tcgattttt 263  Q
    ||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||  |||| |||||||||| | |        ||| |||||    
T  5100650 agccaaaaatggaaaacaattgttagcagtcatcataa-aattgatttttgctcggccattgcattactatctttcattgattcattccactcggttttt 5100748  T
Q  264 cttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacag 325  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  5100749 cttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacag 5100810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 366 - 478
Target Start/End: Complemental strand, 2939210 - 2939098
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    ||||||||| ||||||| ||||| ||||||||||||| |||||||||| | ||||||||| |||||||||||||||||||||| || |||||||||||||    
T  2939210 atcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgatactacc 2939111  T
Q  466 ctctgcccctctt 478  Q
    |||||||| ||||    
T  2939110 ctctgcccttctt 2939098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 366 - 478
Target Start/End: Complemental strand, 5178034 - 5177922
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    ||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||     
T  5178034 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact 5177935  T
Q  466 ctctgcccctctt 478  Q
    ||||| |||||||    
T  5177934 ctctgaccctctt 5177922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 366 - 478
Target Start/End: Complemental strand, 5279859 - 5279747
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    ||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||     
T  5279859 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactact 5279760  T
Q  466 ctctgcccctctt 478  Q
    ||||| |||||||    
T  5279759 ctctgaccctctt 5279747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 366 - 478
Target Start/End: Original strand, 5688903 - 5689015
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    ||||||||| |||||||||||||| ||||||||||||||| | |||||||||||| ||  ||||||||||||||||| |||||||||||||||||||||     
T  5688903 atcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 5689002  T
Q  466 ctctgcccctctt 478  Q
    ||||| |||||||    
T  5689003 ctctgtccctctt 5689015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 245 - 478
Target Start/End: Original strand, 5180644 - 5180886
Alignment:
Q  245 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatc 344  Q
    ||||||| | ||| ||||||||||||||||||||||||||||| ||   |   || ||||||| |||||||||||| |||| || |||  |||||||| |    
T  5180644 ttcattccactcggtttttcttctttctgttctgattgaagtcgtcggcgtgttcgtcttcagcagagaatctcttcacagagcattcagtttcatcacc 5180743  T
Q  345 actacaagtaattgtattcaaatc---------atatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccact 435  Q
     ||||||| |||   |||||||||         |||||| ||||||| || |||||||||||||||||||   |||||||||||||||   |||||||||    
T  5180744 tctacaagcaatgagattcaaatcttgtgcatcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccact 5180843  T
Q  436 ttgttaccaggttctatacttgatactaccctctgcccctctt 478  Q
    |||||||| |||||||| ||||||||||||||||| |||||||    
T  5180844 ttgttaccgggttctatgcttgatactaccctctgaccctctt 5180886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 5398615 - 5398510
Alignment:
Q  70 ttaaatggtacatgacatggaagaattgtagcagaccaaattagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaac 169  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||||    
T  5398615 ttaaatagtacatgacatggaagaattgtaacagaacaaattagaatctttcaccactc----tgaata-aaaaattcaccatggataaaatctagaaac 5398521  T
Q  170 ttcagccaaaa 180  Q
    || ||||||||    
T  5398520 ttaagccaaaa 5398510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5334700 - 5334630
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaattagaatctt 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5334700 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccagattagaatctt 5334630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 5135613 - 5135726
Alignment:
Q  70 ttaaatggtacatgacatggaagaattgtagcagaccaaattagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaac 169  Q
    |||||||||| || |||||||||||||||| |||| |||||||||||||||||  ||||||| ||||||||||||||||||| | |||||||||||||||    
T  5135613 ttaaatggtatataacatggaagaattgtaacagaacaaattagaatctttcagaactctttttgaatacaaaaattcaccaagaataaaatctagaaac 5135712  T
Q  170 ttcag-ccaaaaat 182  Q
    | ||| ||||||||    
T  5135713 tacagaccaaaaat 5135726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 5352691 - 5352803
Alignment:
Q  236 ttacaatctttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttcttt 335  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||  || ||| ||  |||||||||| |||||||||||||||||||| | || ||    
T  5352691 ttaccatctttcattccattcgatttttcttctttctgttctgattgacatcttcagtgtgctcctcttcaatagagaatctcttgacagggtgctcatt 5352790  T
Q  336 ttcatcatcacta 348  Q
    |||||||||||||    
T  5352791 ttcatcatcacta 5352803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 5242145 - 5242270
Alignment:
Q  70 ttaaatggtacatgacatggaagaattgtagcagaccaaattagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaac 169  Q
    ||||||||||||||||||| ||||||| || || | |||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  5242145 ttaaatggtacatgacatgaaagaattataacataacaaattagaaactttcaccactctctgtcaata-aaaaattcaccatggataaaatctagaaac 5242243  T
Q  170 ttcagccaaaaatgg-aaacaattgtt 195  Q
    | |||  ||| |||| |||||||||||    
T  5242244 tacagaaaaagatggaaaacaattgtt 5242270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 366 - 476
Target Start/End: Complemental strand, 5351695 - 5351585
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    ||||||||| |||||||||  |||||| ||||||||| |||||||||| |||||||||   ||||||||||||||||  ||||||||||||||||||| |    
T  5351695 atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgatactaac 5351596  T
Q  466 ctctgcccctc 476  Q
    |||||||||||    
T  5351595 ctctgcccctc 5351585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 366 - 475
Target Start/End: Original strand, 5242512 - 5242621
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    ||||||||| |||||||||  |||||||||||||||||||   |||||||||||||||   |||||||||||||||||||||||||||||| |||||||     
T  5242512 atcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactact 5242611  T
Q  466 ctctgcccct 475  Q
    ||| ||||||    
T  5242612 ctcagcccct 5242621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 245 - 472
Target Start/End: Original strand, 5255984 - 5256220
Alignment:
Q  245 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatc 344  Q
    ||||||| | ||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||| || ||||   |||  | |||  ||||||||      
T  5255984 ttcattccactcggtttttcttctttctgttctgattgaaatcatcagtgggctcctcttcagtagaaaaactctcttcagaccattcactttcatcacg 5256083  T
Q  345 actacaagtaattgtattcaaat---------catatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccact 435  Q
     ||||||| |||   ||||||||         ||||||| | ||||| || ||||||||||||||||||||||||||  ||||||||    |||||||||    
T  5256084 gctacaagcaatgtgattcaaattttgtgcatcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccact 5256183  T
Q  436 ttgttaccaggttctatacttgatactaccctctgcc 472  Q
    |||||||| ||||| |||||||||| |||||||||||    
T  5256184 ttgttacctggttcaatacttgatattaccctctgcc 5256220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 366 - 476
Target Start/End: Complemental strand, 5346324 - 5346214
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    ||||||||  ||||||| || ||||||||||||||||||| ||||||||| |||||    |||||||||||||||||||||||||||||||||||| ||     
T  5346324 atcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaact 5346225  T
Q  466 ctctgcccctc 476  Q
    ||||| |||||    
T  5346224 ctctggccctc 5346214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 366 - 470
Target Start/End: Complemental strand, 5098506 - 5098402
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaa-aatgaacctccactttgttaccaggttctatacttgatactac 464  Q
    ||||||||| |||||||||| |||||| ||||||||||||   ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||    
T  5098506 atcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatga-cctccactttgttaccaggttctatacttgatattac 5098408  T
Q  465 cctctg 470  Q
    ||||||    
T  5098407 cctctg 5098402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 5334457 - 5334368
Alignment:
Q  389 tcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctctt 478  Q
    ||||||||| ||||||||||||||| |||||||||   ||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  5334457 tcttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctctt 5334368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 366 - 463
Target Start/End: Original strand, 23127310 - 23127407
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 463  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||||||||| | |  |||||||| ||||||||||||||||  |||||||||||    
T  23127310 atcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatacta 23127407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 476
Target Start/End: Complemental strand, 5449022 - 5448794
Alignment:
Q  257 gatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagtaat 356  Q
    ||||||||||||||||||||||||||||||||||   ||  || ||||||||||||||  |||| | || || ||| ||||||||| | ||||||| |||    
T  5449022 gatttttcttctttctgttctgattgaagtcatctgcgggatcgtcttcagtagagaagttctttagagagcattcattttcatcacctctacaagcaat 5448923  T
Q  357 tgtattcaaatc---------atatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggt 447  Q
        || |||||         |||||| ||||| |||  |||||||| |||| ||||||||||||| |||||||||   | |||||||||||| || |||    
T  5448922 gacgttaaaatcttgtgcatcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggt 5448823  T
Q  448 tctatacttgatactaccctctgcccctc 476  Q
    |||||||||||||||| ||||||||||||    
T  5448822 tctatacttgatactaacctctgcccctc 5448794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 5687661 - 5687556
Alignment:
Q  106 caaattagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaaatgg-aaacaattgttagcggtcac 204  Q
    |||||||||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||| ||| ||||||||||| |   ||||    
T  5687661 caaattagaatctttcaaaactctttgtgaatacaaaaattcacc--ggataaaatctagaaactgcagccaaaattggaaaacaattgttggtaatcac 5687564  T
Q  205 cataagaa 212  Q
    ||||||||    
T  5687563 cataagaa 5687556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 370 - 468
Target Start/End: Original strand, 5100822 - 5100920
Alignment:
Q  370 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctc 468  Q
    ||||| |||||||||| |||||| ||||||||||||   ||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||||||    
T  5100822 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctc 5100920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 370 - 468
Target Start/End: Original strand, 5135923 - 5136021
Alignment:
Q  370 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctc 468  Q
    ||||| |||||||||| |||||| ||||||||||||   ||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||||||    
T  5135923 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctc 5136021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 472
Target Start/End: Original strand, 5283224 - 5283330
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaa-atgaacctccactttgttaccaggttctatacttgatactac 464  Q
    ||||||||| ||||||| || |||||||||||||||||||   || ||||||||||| |||| |||||||||||||||| ||||| |||||||||| |||    
T  5283224 atcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatga-cctccactttgttacctggttcgatacttgatattac 5283322  T
Q  465 cctctgcc 472  Q
    ||||||||    
T  5283323 cctctgcc 5283330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 366 - 476
Target Start/End: Original strand, 5065449 - 5065559
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    ||||||||  ||||||||||||||| ||||||||| |||| | ||||||||||||| |  ||  |||||||| || |||||||| ||||||||||||||     
T  5065449 atcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactact 5065548  T
Q  466 ctctgcccctc 476  Q
    |||||||||||    
T  5065549 ctctgcccctc 5065559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 366 - 476
Target Start/End: Original strand, 5126629 - 5126739
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    ||||||||  |||||||| | ||||||||||||||||||| | |||| |||||||| |  || ||| ||||||||||||| ||||||||||||||||||     
T  5126629 atcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactact 5126728  T
Q  466 ctctgcccctc 476  Q
    |||| ||||||    
T  5126729 ctctccccctc 5126739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 366 - 476
Target Start/End: Original strand, 5352863 - 5352973
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    ||||||||| ||||||| ||||||||||||||| ||||||  |||||| ||||||| |   ||||| ||||||| |||||| || ||||||||||||||     
T  5352863 atcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttgatactact 5352962  T
Q  466 ctctgcccctc 476  Q
    |||||||||||    
T  5352963 ctctgcccctc 5352973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 366 - 464
Target Start/End: Complemental strand, 5427195 - 5427097
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 464  Q
    ||||||||| |||||||||  ||||||| |||||| ||||   |||||||||||||||   ||||||| ||||||||||||||||||||||||||||||    
T  5427195 atcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactac 5427097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 368
Target Start/End: Original strand, 5155866 - 5155973
Alignment:
Q  261 tttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagtaattgta 360  Q
    ||||||||||||||| |||||| |||||||| |||  ||| |||||| ||  ||||||||||||| | |||| |||||||||| |||||||| ||||| |    
T  5155866 tttcttctttctgttttgattgcagtcatcaatgggatccccttcagaagctaatctcttgacagagagttcattttcatcattactacaagaaattgca 5155965  T
Q  361 ttcaaatc 368  Q
    ||||||||    
T  5155966 ttcaaatc 5155973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 356
Target Start/End: Original strand, 5242360 - 5242459
Alignment:
Q  255 tcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagagaatctcttgacagggcgttctttttcatcatcactacaagta 354  Q
    ||||||||||||  ||| |||||||||||||||||||   | ||||||||||||||||||||||||||||| |||||| | ||||||| | ||| |||||    
T  5242360 tcgatttttctt--ttccgttctgattgaagtcatcagcaggctcctcttcagtagagaatctcttgacagagcgttcatcttcatcacctctataagta 5242457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 463
Target Start/End: Original strand, 5072692 - 5072779
Alignment:
Q  376 agataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 463  Q
    ||||||| | ||||||| |||||||||||||| ||||||| |||||    ||||||||||| ||||||||| ||||||||||||||||    
T  5072692 agataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttgatacta 5072779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 5255884 - 5255930
Alignment:
Q  150 catggataaaatctagaaacttcagccaaaaatgg-aaacaattgtt 195  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  5255884 catggataaaatctagaaacttcagccaaaaatggaaaacaattgtt 5255930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 476
Target Start/End: Complemental strand, 5253827 - 5253718
Alignment:
Q  367 tcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccc 466  Q
    |||||||  ||||||||||| ||| ||||||||||||||   ||||||||||||| |  || ||||||||| || |||||||| |||||| ||| ||| |    
T  5253827 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactc 5253728  T
Q  467 tctgcccctc 476  Q
    | ||||||||    
T  5253727 tttgcccctc 5253718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 425
Target Start/End: Original strand, 2657155 - 2657210
Alignment:
Q  370 tatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatg 425  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||| || ||||||||    
T  2657155 tatacgagataaattgttgccttcttcacaatgaaatcattctcgaatacaaaatg 2657210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 5155768 - 5155832
Alignment:
Q  128 ctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaaatgga-aacaattg 193  Q
    ||||||||||| ||||||| |||||||||  |||| |||||||||||||||||||||| ||||||||    
T  5155768 ctttgtgaatataaaaatttaccatggat--aatcaagaaacttcagccaaaaatggagaacaattg 5155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 13114436 - 13114393
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaatt 63  Q
    ||||||| |||||||||||||||||| |||||||||||||||||    
T  13114436 aaatgacctatattacagggggtaaagacctattaacccaaatt 13114393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 476
Target Start/End: Original strand, 5124443 - 5124553
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    |||||||| || ||| | |||||||| ||||||||||||    |||| ||||||||||  ||  |||||||| ||||||||||||||||| |||||||      
T  5124443 atcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatactaat 5124542  T
Q  466 ctctgcccctc 476  Q
    || ||||||||    
T  5124543 ctatgcccctc 5124553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 23127164 - 23127210
Alignment:
Q  137 tacaaaaattcaccatggataaaatctagaaacttcagccaaaaatg 183  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||    
T  23127164 tacaaaaatttaccatgcataaaatctagaaacttcatccaaaaatg 23127210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 10344089 - 10344049
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  10344089 gaaatgacctatattacagggggtaaagacctattaaccca 10344049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 5180539 - 5180598
Alignment:
Q  137 tacaaaaattcaccatggataaaatctagaaacttcagccaaaaatgg-aaacaattgtt 195  Q
    |||||||| | | ||||||||||||||| ||||||||||| ||||||| |||||||||||    
T  5180539 tacaaaaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt 5180598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 29942461 - 29942500
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  29942461 gaaatgacctatattacagggggtaaagacctattaaccc 29942500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 14585386 - 14585348
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaacc 57  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  14585386 gaaatgatttatattacaggggataaaaacctattaacc 14585348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 3593591 - 3593632
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||| |||||||||| ||||||| |||||||||||||||    
T  3593591 aaatgacatatattacagagggtaaagacctattaacccaaa 3593632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 5334498 - 5334453
Alignment:
Q  260 ttttcttctttctgttctgattgaagtcatcactggactcctcttc 305  Q
    |||||||||||||||||| ||||||||||||| ||| ||| |||||    
T  5334498 ttttcttctttctgttctcattgaagtcatcagtgggctcatcttc 5334453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8237976 - 8238033
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||  || ||| ||||||||| |||||||||||||||||||  ||||||||||    
T  8237976 ttacagggtggaaaaccggaaatgacctatattacagggggtaaaacactattaaccc 8238033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 14328668 - 14328705
Alignment:
Q  23 tgacttatattacagggggtaaaaacctattaacccaa 60  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  14328668 tgacctatattacagggggtaaagacctattaacccaa 14328705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 14421678 - 14421715
Alignment:
Q  23 tgacttatattacagggggtaaaaacctattaacccaa 60  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  14421678 tgacctatattacagggggtaaagacctattaacccaa 14421715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 24387788 - 24387821
Alignment:
Q  28 tatattacagggggtaaaaacctattaacccaaa 61  Q
    |||||||||||||||||| |||||||||||||||    
T  24387788 tatattacagggggtaaagacctattaacccaaa 24387821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31851815 - 31851758
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| | ||||||| ||||||||||||| |||| ||||||||||||    
T  31851815 ttacaggggggaaaaccgaaaatgacctatattacaggggataaagacctattaaccc 31851758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 5283109 - 5283153
Alignment:
Q  245 ttcattcaattcgatttttcttctttctgttctgattgaagtcat 289  Q
    ||||||| | ||| ||||||||||||||||||||| |||||||||    
T  5283109 ttcattccactcggtttttcttctttctgttctgagtgaagtcat 5283153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 13114644 - 13114680
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaac 56  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  13114644 aaatgacatatattacagggggtaaagacctattaac 13114680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 13639548 - 13639508
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    |||||||| |||||||||||||||||| ||||| |||||||    
T  13639548 gaaatgacctatattacagggggtaaagacctactaaccca 13639508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 26141486 - 26141518
Alignment:
Q  14 aactggaaatgacttatattacagggggtaaaa 46  Q
    ||||||||||||||||||||||||||| |||||    
T  26141486 aactggaaatgacttatattacaggggataaaa 26141518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 366 - 476
Target Start/End: Original strand, 47985393 - 47985503
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||     
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
Q  466 ctctgcccctc 476  Q
    |||| ||||||    
T  47985493 ctctccccctc 47985503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 366 - 476
Target Start/End: Original strand, 48003967 - 48004077
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||||     
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
Q  466 ctctgcccctc 476  Q
    |||| ||||||    
T  48004067 ctctccccctc 48004077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 366 - 476
Target Start/End: Original strand, 47994680 - 47994790
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| | ||||||||||||||||||     
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
Q  466 ctctgcccctc 476  Q
    |||| ||||||    
T  47994780 ctctccccctc 47994790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 366 - 476
Target Start/End: Original strand, 48013252 - 48013362
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |   ||||||||||||||||| | ||||||||||||||||||     
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
Q  466 ctctgcccctc 476  Q
    |||| ||||||    
T  48013352 ctctccccctc 48013362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 47985062 - 47985177
Alignment:
Q  81 atgacatggaagaattgtagcagaccaaattagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaa 180  Q
    ||||| ||||||||||||| || | ||||||  |||||||||||  |||||  || |||||||||| |||||| ||||||||||||||||||||||||||    
T  47985062 atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa 47985161  T
Q  181 atgg-aaacaattgtt 195  Q
     ||| |||||||||||    
T  47985162 ttggaaaacaattgtt 47985177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 47994349 - 47994464
Alignment:
Q  81 atgacatggaagaattgtagcagaccaaattagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaa 180  Q
    ||||| ||||||||||||| || | ||||||  |||||||||||  |||||  || |||||||||| |||||| ||||||||||||||||||||||||||    
T  47994349 atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa 47994448  T
Q  181 atgg-aaacaattgtt 195  Q
     ||| |||||||||||    
T  47994449 ttggaaaacaattgtt 47994464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 48003636 - 48003751
Alignment:
Q  81 atgacatggaagaattgtagcagaccaaattagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaa 180  Q
    ||||| ||||||||||||| || | ||||||  |||||||||||  |||||  || |||||||||| |||||| ||||||||||||||||||||||||||    
T  48003636 atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa 48003735  T
Q  181 atgg-aaacaattgtt 195  Q
     ||| |||||||||||    
T  48003736 ttggaaaacaattgtt 48003751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 48012921 - 48013036
Alignment:
Q  81 atgacatggaagaattgtagcagaccaaattagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaa 180  Q
    ||||| ||||||||||||| || | ||||||  |||||||||||  |||||  || |||||||||| |||||| ||||||||||||||||||||||||||    
T  48012921 atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa 48013020  T
Q  181 atgg-aaacaattgtt 195  Q
     ||| |||||||||||    
T  48013021 ttggaaaacaattgtt 48013036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 47985230 - 47985298
Alignment:
Q  245 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 313  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  47985230 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47985298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 47994517 - 47994585
Alignment:
Q  245 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 313  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  47994517 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47994585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 48003804 - 48003872
Alignment:
Q  245 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 313  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  48003804 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48003872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 48013089 - 48013157
Alignment:
Q  245 ttcattcaattcgatttttcttctttctgttctgattgaagtcatcactggactcctcttcagtagaga 313  Q
    ||||||| | ||| ||||||||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  48013089 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48013157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 27497839 - 27497799
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  27497839 ggaaatgacttatattacagggggtaaagacctattaaccc 27497799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47115562 - 47115622
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    |||||| ||||| ||| | ||||||| |||||||||||||||||| |||||||||||||||    
T  47115562 ttacagaggagaaaaccgaaaatgacctatattacagggggtaaagacctattaacccaaa 47115622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 49880737 - 49880796
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaa 60  Q
    ||||||||| |  ||| ||||||||| |||||||||||||||||| ||||||||||||||    
T  49880737 ttacagggggggaaaccggaaatgacctatattacagggggtaaagacctattaacccaa 49880796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5205174 - 5205116
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacag-ggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| |||||||||| |||||||||||||||||||||    
T  5205174 ttacaggggggaaaaccggaaatgacctatattacaggggggtaaaaacctattaaccc 5205116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5205354 - 5205412
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattaca-gggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  5205354 ttacaggggggaaaaccggaaatgacctatattacaggggggtaaaaacctattaaccc 5205412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7118145 - 7118084
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggg-gtaaaaacctattaacccaaa 61  Q
    ||||||||| || ||| ||||||||| ||||||||||||| ||||| |||||||||||||||    
T  7118145 ttacaggggggaaaaccggaaatgacctatattacaggggtgtaaagacctattaacccaaa 7118084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 8827438 - 8827479
Alignment:
Q  14 aactggaaatgacttatattacagggggtaaaaacctattaa 55  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  8827438 aactggaaatgacctatattacagggggtaaagacctattaa 8827479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35460702 - 35460657
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaa 46  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||    
T  35460702 ttacaggggagaaaactagaaatgacctatattacagggggtaaaa 35460657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36867857 - 36867914
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||| ||| ||||||||| ||||||| |||||||||| | ||||||||||    
T  36867857 ttacaggggagaaaaccggaaatgacctatattatagggggtaaagatctattaaccc 36867914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49872950 - 49873006
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| |||||||||||||||||| ||||||||||||    
T  49872950 ttacagggg-gaaaaccggaaatgacctatattacagggggtaaagacctattaaccc 49873006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 6510255 - 6510215
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  6510255 ggaaatgacctatattacagggggtaaagacctattaaccc 6510215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 20737550 - 20737510
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  20737550 ggaaatgacctatattatagggggtaaaaacctattaaccc 20737510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29313845 - 29313789
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacc 57  Q
    |||||||||||| ||| | ||||||| ||||||||||| |||||| |||||||||||    
T  29313845 ttacaggggagaaaaccgaaaatgacctatattacaggaggtaaagacctattaacc 29313789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 34314848 - 34314904
Alignment:
Q  3 acaggggagataactggaaatgacttatattacagg-gggtaaaaacctattaaccc 58  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||  ||||||||||    
T  34314848 acaggggagaaaaccggaaatgacttatattacaggtgggtaaaacactattaaccc 34314904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 37050062 - 37050018
Alignment:
Q  14 aactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||    
T  37050062 aactggaaatgacttatattacatggggtaaaacactattaaccc 37050018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14154836 - 14154782
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaac 56  Q
    ||||||||| || ||| |||||||||||||||||||||||||||||  ||||||||    
T  14154836 ttacagggg-gaaaacaggaaatgacttatattacagggggtaaaacactattaac 14154782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 14248831 - 14248881
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaacccaaattagaat 68  Q
    ||||||||| ||| |||| ||||||||| |||||||||||||||| |||||    
T  14248831 ggaaatgacctattttacggggggtaaagacctattaacccaaataagaat 14248881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 22949286 - 22949248
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaac 56  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  22949286 ggaaatgacctatattacagggggtaaagacctattaac 22949248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 30586220 - 30586162
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacag-ggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| |||||||||| |||||||| ||||||||||||    
T  30586220 ttacaggggtgaaaaccggaaatgacctatattacaggggggtaaagacctattaaccc 30586162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 48044747 - 48044785
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  48044747 aaatgacttatattgcagggggtaaaagcctattaaccc 48044785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 51460782 - 51460820
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  51460782 aaatgacctatattacagggggtaaagacctattaaccc 51460820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 5417283 - 5417320
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaa 55  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  5417283 ggaaatgacctatattacaggaggtaaaaacctattaa 5417320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14241271 - 14241214
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| | || ||| ||||||||| |||||||||||||||||| |||||| |||||    
T  14241271 ttacaggtgggaaaaccggaaatgacctatattacagggggtaaagacctataaaccc 14241214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 23626254 - 23626299
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaacccaaatt 63  Q
    ||||||||| |||||||||||||||||||  |||||||||| ||||    
T  23626254 ggaaatgacctatattacagggggtaaaacactattaaccccaatt 23626299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 26769959 - 26769918
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||| |||||||||||||||||||  |||||||||||||    
T  26769959 aaatgacctatattacagggggtaaaacactattaacccaaa 26769918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 54567765 - 54567802
Alignment:
Q  23 tgacttatattacagggggtaaaaacctattaacccaa 60  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  54567765 tgacctatattacagggggtaaagacctattaacccaa 54567802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 3526593 - 3526537
Alignment:
Q  5 aggggagataactggaaatgacttatattacagggggtaaaaac-ctattaacccaa 60  Q
    ||||| || ||| ||||||||| ||||||||||||| ||||||| ||||||||||||    
T  3526593 aggggcgaaaaccggaaatgacatatattacaggggttaaaaacactattaacccaa 3526537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13041420 - 13041380
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacaggggg 41  Q
    ||||||||| || ||| ||||||||||||||||||||||||    
T  13041420 ttacaggggggaaaaccggaaatgacttatattacaggggg 13041380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13049497 - 13049457
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacaggggg 41  Q
    ||||||||| || ||| ||||||||||||||||||||||||    
T  13049497 ttacaggggggaaaaccggaaatgacttatattacaggggg 13049457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 38344412 - 38344448
Alignment:
Q  28 tatattacagggggtaaaaacctattaacccaaatta 64  Q
    ||||||||||||||||||  |||||||||||||||||    
T  38344412 tatattacagggggtaaatgcctattaacccaaatta 38344448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 476
Target Start/End: Original strand, 36212942 - 36213031
Alignment:
Q  387 tgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactaccctctgcccctc 476  Q
    ||||||||||||||||||||  ||||||||||||| |  |||||||| ||| | |||||||||||||||||||||||  |||||||||||    
T  36212942 tgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatctctgcccctc 36213031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38193194 - 38193254
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    |||||||||||| |||  |||||||| |||||||||||||||||| |||||||||||||||    
T  38193194 ttacaggggagaaaaccagaaatgacctatattacagggggtaaagacctattaacccaaa 38193254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 19979690 - 19979647
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaacccaaat 62  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  19979690 gaaatgacttatattacagggggtaaagacctattaacccaaat 19979647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13797611 - 13797667
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacc 57  Q
    |||||||||||| ||  ||||||||| |||||||||||||||||| |||||||||||    
T  13797611 ttacaggggagaaaatcggaaatgacctatattacagggggtaaagacctattaacc 13797667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 24555919 - 24555958
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  24555919 gaaatgacctatattacagggggtaaaaacctattaaccc 24555958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 39580183 - 39580226
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  39580183 ggaaatgacctatattacagggggtaaagacctattaacccaaa 39580226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3951602 - 3951660
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    |||||||||||| ||| ||||||||| ||||||| ||| |||||| |||||||||||||    
T  3951602 ttacaggggagaaaaccggaaatgacatatattataggaggtaaagacctattaaccca 3951660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 13279436 - 13279477
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  13279436 aaatgacctatattacagggggtaaagacctattaacccaaa 13279477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 21298052 - 21298015
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacc 57  Q
    |||||||||||||||||||||||||| |||||||||||    
T  21298052 aaatgacttatattacagggggtaaagacctattaacc 21298015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 31534176 - 31534221
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaacccaaatt 63  Q
    |||||||||||||||||||||| ||||||  |||||||||||||||    
T  31534176 ggaaatgacttatattacagggtgtaaaacactattaacccaaatt 31534221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5864502 - 5864442
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacag-ggggtaaaaacctattaacccaa 60  Q
    |||||||||  | |||||||||||||||||||||||| |||||||||  ||||||||||||    
T  5864502 ttacagggggaaaaactggaaatgacttatattacaggggggtaaaagactattaacccaa 5864442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 6269572 - 6269528
Alignment:
Q  14 aactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  6269572 aactgaaaatgacctatattacagggggtaaagacctattaaccc 6269528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 32946330 - 32946286
Alignment:
Q  14 aactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||||||| |||||||||||||||||||  ||||||||||    
T  32946330 aactggaaatgacctatattacagggggtaaaatactattaaccc 32946286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 35158501 - 35158557
Alignment:
Q  2 tacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||| || ||| | |||||||||||||||||||||||||||  ||||||||||    
T  35158501 tacaggggggaaaaccgaaaatgacttatattacagggggtaaaagactattaaccc 35158557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 3307693 - 3307736
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||||| |||||||||||||||||| || ||||||||||||    
T  3307693 ggaaatgacctatattacagggggtaaagacttattaacccaaa 3307736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 23371487 - 23371448
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  23371487 aaatgacctatattacagggggtaaagacctattaaccca 23371448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5766695 - 5766637
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    |||||||||  | ||| ||||||||| |||||||||||||||||| || ||||||||||    
T  5766695 ttacagggggaaaaaccggaaatgacctatattacagggggtaaagacatattaaccca 5766637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 5909752 - 5909710
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    |||||||| ||||||||| |||||||| |||||||||||||||    
T  5909752 gaaatgacctatattacatggggtaaagacctattaacccaaa 5909710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13797474 - 13797416
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacag-ggggtaaaaacctattaaccc 58  Q
    ||||| ||| || ||| |||||||||||||||||||| |||||||| ||||||||||||    
T  13797474 ttacaagggggaaaaccggaaatgacttatattacaggggggtaaagacctattaaccc 13797416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 19272468 - 19272506
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  19272468 aaatgacctatattacagggggtaaagacctattaaccc 19272506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 20041135 - 20041193
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggg-gtaaaaacctattaaccc 58  Q
    ||||||||  || ||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  20041135 ttacagggtggaaaaccggaaatgacctatattacaggggggtaaaaacctattaaccc 20041193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39065439 - 39065386
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaa 55  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||| |||||||||    
T  39065439 ttacaggggaaa-aaccggaaatgacctatattacagggggtaaagacctattaa 39065386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 48945222 - 48945184
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  48945222 aaatgacctatattacagagggtaaaaacctattaaccc 48945184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9915707 - 9915651
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||| | ||||| |||| || |||||||||||||||||| ||||||||||||    
T  9915707 ttacaggggaaa-aactgaaaataacctatattacagggggtaaagacctattaaccc 9915651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9923619 - 9923563
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||| | ||||| |||| || |||||||||||||||||| ||||||||||||    
T  9923619 ttacaggggaaa-aactgaaaataacctatattacagggggtaaagacctattaaccc 9923563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12005321 - 12005264
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||| ||| || ||||||||||| | |||||||||||||||||||  ||||||||||    
T  12005321 ttacaagggggaaaactggaaatggcctatattacagggggtaaaacactattaaccc 12005264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 23784621 - 23784584
Alignment:
Q  21 aatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  23784621 aatgacctatattacagggggtaaagacctattaaccc 23784584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24478080 - 24478024
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||  ||||||||||    
T  24478080 ttacaggggaaa-aaccggaaatgacctatattacagggggtaaaacactattaaccc 24478024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2300879 - 2300819
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||| ||| || ||| ||||||||| |||||||||||||||| ||  |||||||||||||    
T  2300879 ttacaagggggaaaaccggaaatgacctatattacagggggtagaacactattaacccaaa 2300819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 48104747 - 48104787
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaa 60  Q
    ||||||| ||||||||||| |||||| ||||||||||||||    
T  48104747 aaatgacctatattacaggaggtaaagacctattaacccaa 48104787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1884 - 1826
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    |||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||    
T  1884 ttacaggggagaaaactggaaatgacctatattacagggggtaaagacctattaaccca 1826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 25569090 - 25569037
Alignment:
Q  411 ctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactac 464  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||||||||||    
T  25569090 ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactac 25569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 24215741 - 24215798
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||| |||  |||||||| |||||||||||||||||| ||||||||||||    
T  24215741 ttacaggggagaaaaccagaaatgacctatattacagggggtaaagacctattaaccc 24215798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32682489 - 32682546
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||  ||||||||||    
T  32682489 ttacaggggagaaaaccggaaatgacttatattacatggggtaaaatactattaaccc 32682546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 37273408 - 37273452
Alignment:
Q  14 aactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||    
T  37273408 aactggaaatgacctatattacagggggtaaagacctattaaccc 37273452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 50727629 - 50727590
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  50727629 gaaatgacctatattacagggggtaaaaacctattaaccc 50727590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 50735643 - 50735604
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  50735643 gaaatgacctatattacagggggtaaaaacctattaaccc 50735604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 22272968 - 22272930
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  22272968 aaatgacctatattacagggggtaaaaacctattaaccc 22272930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11563517 - 11563574
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||| | |||  |||||||| |||||||||||||||||| ||||||||||||    
T  11563517 ttacaggggaaaaaaccagaaatgacctatattacagggggtaaagacctattaaccc 11563574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 16493575 - 16493518
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| ||||||||||| |||||| ||||||||||||    
T  16493575 ttacaggggtgaaaaccggaaatgacctatattacaggaggtaaagacctattaaccc 16493518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 472
Target Start/End: Original strand, 4132618 - 4132721
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    ||||||||  |||||||||| ||||||| |||||||||||   ||| |||||||||    || ||| ||||||| ||||||||| ||| ||||||||||     
T  4132618 atcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacaa---caatctcgactttgtcaccaggttccatatttgatactact 4132714  T
Q  466 ctctgcc 472  Q
    |||||||    
T  4132715 ctctgcc 4132721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 20125435 - 20125475
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  20125435 ggaaatgacctatattacagggggtaaagacctattaaccc 20125475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21798566 - 21798625
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||||| || ||||| ||||||| ||||||||||||| |||| |||||||||||||||    
T  21798566 ttacagggggga-aactgaaaatgacctatattacaggggataaagacctattaacccaaa 21798625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27579744 - 27579800
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacc 57  Q
    |||||||||||| ||| ||||||||| |||||||||| ||||||| || ||||||||    
T  27579744 ttacaggggagaaaaccggaaatgacctatattacagagggtaaagacatattaacc 27579800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 35539797 - 35539837
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  35539797 ggaaatgacctatattacagggggtaaatacctattaaccc 35539837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 49300794 - 49300734
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||||| || ||| ||||||||| |||||||||||||||||||  |||||||| ||||    
T  49300794 ttacaggggggaaaaccggaaatgacctatattacagggggtaaaacactattaactcaaa 49300734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 550711 - 550672
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  550711 aaatgacctatattacagggggtaaagacctattaaccca 550672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 461
Target Start/End: Original strand, 4122644 - 4122739
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatac 461  Q
    ||||||||  |||||||||| ||||||| |||||||||||   ||  ||||||||| |  || ||||||||||| ||||||||| ||| |||||||    
T  4122644 atcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccatatttgatac 4122739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 27579563 - 27579516
Alignment:
Q  9 gagataactggaaatgacttatattacagggggtaaaaacctattaac 56  Q
    |||| ||| ||||||||| |||||||||||||||||| ||||||||||    
T  27579563 gagaaaaccggaaatgacctatattacagggggtaaagacctattaac 27579516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 51396198 - 51396159
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  51396198 gaaatgacttatattacaggggataaagacctattaaccc 51396159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 472
Target Start/End: Original strand, 7884155 - 7884261
Alignment:
Q  366 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatactacc 465  Q
    |||||| |||||||||| |||||| |||||||||||||| |||||   |||||||| |   ||||  | || ||| |||||||||||| |||||| |||     
T  7884155 atcatagacaagataaattgttgttttcttcacaatgaattcatttgtaaaaacaacaaccaccttaatttcgtttccaggttctatatttgatattact 7884254  T
Q  466 ctctgcc 472  Q
    |||||||    
T  7884255 ctctgcc 7884261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 9001474 - 9001444
Alignment:
Q  28 tatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||||||||||||||||||||||    
T  9001474 tatattacagggggtaaaaacctattaaccc 9001444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18454250 - 18454192
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacag-ggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| |||||||||| |||||||| ||||||||||||    
T  18454250 ttacaggggtgaaaaccggaaatgacctatattacaggggggtaaagacctattaaccc 18454192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 20125262 - 20125216
Alignment:
Q  14 aactggaaatgacttatattacagggggtaaaaacctattaacccaa 60  Q
    ||||||||||||  |||||| ||||||||||| ||||||||||||||    
T  20125262 aactggaaatgaactatattccagggggtaaatacctattaacccaa 20125216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 21780160 - 21780122
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  21780160 aaatgacctatattacagggggtaaagacctattaaccc 21780122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46094240 - 46094298
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    |||||||||  | ||| ||||||||| |||||||||| ||||||| |||||||||||||    
T  46094240 ttacagggggaaaaaccggaaatgacctatattacagagggtaaagacctattaaccca 46094298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 50138526 - 50138488
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  50138526 aaatgacctatattacagggggtaaagacctattaaccc 50138488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31226499 - 31226556
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||  | ||| ||||||||| |||||||||||||||||||  ||||||||||    
T  31226499 ttacagggggtaaaaccggaaatgacctatattacagggggtaaaacactattaaccc 31226556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 51965412 - 51965371
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    ||||||||| |||||||||||| ||||| |||||||||||||    
T  51965412 ggaaatgacctatattacagggagtaaagacctattaaccca 51965371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 2032748 - 2032788
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||||  ||||||||||    
T  2032748 ggaaatgacctatattacagggggtaaaatactattaaccc 2032788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 18510027 - 18509983
Alignment:
Q  14 aactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||||||| ||||||||||||| |||||  ||||||||||    
T  18510027 aactggaaatgacctatattacaggggataaaacactattaaccc 18509983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 29104199 - 29104159
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||||  ||||||||||    
T  29104199 ggaaatgacctatattacagggggtaaaacactattaaccc 29104159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 50773621 - 50773661
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||||||||| ||||||||||  ||||||||||    
T  50773621 ggaaatgacttatattacggggggtaaaacactattaaccc 50773661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34827 - 34885
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaa 60  Q
    ||||||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  34827 ttacagggg-gaaaactggaaatgacctatattacagggggtaaagacctattaacccaa 34885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28149667 - 28149724
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    ||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  28149667 ttacagggg-gaaaaccggaaatgacctatattacagggggtaaaaacctattaaccca 28149724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 17328149 - 17328092
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| |||||||||||||||||| ||||||||||||    
T  17328149 ttacaggggggaaaaccggaaatgacctatattacagggggtaaagacctattaaccc 17328092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34635763 - 34635706
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| |||||||||||||||||| ||||||||||||    
T  34635763 ttacaggggggaaaaccggaaatgacctatattacagggggtaaagacctattaaccc 34635706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38128079 - 38128136
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || |||||||||| ||||||||||||||||||||||  ||||||||||    
T  38128079 ttacaggggggaaaactggaaataacttatattacagggggtaaaagactattaaccc 38128136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 6468098 - 6468058
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  6468098 ggaaatgacttatattacagggggtaaaaacttattaaccc 6468058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 460
Target Start/End: Original strand, 22583333 - 22583396
Alignment:
Q  397 acaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgata 460  Q
    ||||||||||  |||||| |||||| |  |||||||||||| ||||||||||||||||||||||    
T  22583333 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatacttgata 22583396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32449744 - 32449689
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaac 56  Q
    |||||||||||| ||| ||||||||| ||||||| |||||||||| ||||||||||    
T  32449744 ttacaggggagaaaaccggaaatgacctatattaaagggggtaaagacctattaac 32449689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 3364580 - 3364618
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  3364580 aaatgacttatattacagggggtaaagacctattaaccc 3364618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19641503 - 19641445
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    ||||||||  || ||| ||||||||| |||||||||||||||||| |||||||||||||    
T  19641503 ttacagggtggaaaaccggaaatgacctatattacagggggtaaagacctattaaccca 19641445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19840096 - 19840038
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    ||||||||  || ||| ||||||||| |||||||||||||||||| |||||||||||||    
T  19840096 ttacagggtggaaaaccggaaatgacctatattacagggggtaaagacctattaaccca 19840038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 29835140 - 29835099
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  29835140 aaatgacctatattacagggggtaaagacctattaacccaaa 29835099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 37147591 - 37147551
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  37147591 ggaaatgacctatattacagggggtaaagacctattaaccc 37147551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 38210921 - 38210865
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacc 57  Q
    |||||||||||| |||  ||||| || |||||||||||||||||| |||||||||||    
T  38210921 ttacaggggagaaaaccagaaattacctatattacagggggtaaagacctattaacc 38210865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 19052191 - 19052230
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  19052191 gaaatgacatatattacagggggtaaagacctattaaccc 19052230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 20182511 - 20182554
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||||| |||||||| ||||||||| |||||||||||||||    
T  20182511 ggaaatgacctatattacggggggtaaagacctattaacccaaa 20182554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 22846051 - 22846012
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  22846051 aaatgacttatattacagggggtaaaacactattaaccca 22846012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 27866245 - 27866194
Alignment:
Q  7 gggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||| ||| ||||||||| |||||||||||||||||| || |||||||||    
T  27866245 gggagaaaaccggaaatgacgtatattacagggggtaaagacttattaaccc 27866194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 38385975 - 38385936
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaacc 57  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  38385975 ggaaatgacctatattacagggggtaaagacctattaacc 38385936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 776611 - 776649
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  776611 aaatgacttatattacagggggtaaaactctattaaccc 776649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 3364365 - 3364327
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  3364365 aaatgacttatattacaggggataaagacctattaaccc 3364327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 19493467 - 19493505
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  19493467 aaatgacctatattacagggggtaaagacctattaaccc 19493505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 20182302 - 20182264
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  20182302 aaatgacctatattacaggggataaaaacctattaaccc 20182264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 22116193 - 22116155
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  22116193 aaatgacctatattacagggggtaaagacctattaaccc 22116155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 43301919 - 43301877
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    |||||||| |||||||||||||||||| |||||||||| ||||    
T  43301919 gaaatgacctatattacagggggtaaagacctattaactcaaa 43301877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 45464630 - 45464668
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  45464630 aaatgacctatattacaggaggtaaaaacctattaaccc 45464668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 758745 - 758802
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| ||||||||||||||||||   ||||||||||    
T  758745 ttacaggggggaaaaccggaaatgacctatattacagggggtaaagcactattaaccc 758802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 18555617 - 18555576
Alignment:
Q  18 ggaaatgacttatattacag-ggggtaaaaacctattaaccc 58  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  18555617 ggaaatgacttatattacaggggggtaaagacctattaaccc 18555576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 30371614 - 30371651
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaac 56  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  30371614 gaaatgacctatattacagggggtaaagacctattaac 30371651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 33641170 - 33641129
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||| |||||||||| ||||||| |||||||||||||||    
T  33641170 aaatgacctatattacagagggtaaagacctattaacccaaa 33641129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 38127820 - 38127763
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||  | ||| ||||||||| |||||||||||||||||||  ||||||||||    
T  38127820 ttacagggggtaaaaccggaaatgacctatattacagggggtaaaacactattaaccc 38127763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 29098058 - 29098022
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaa 55  Q
    |||||||||||||||||| |||||||| |||||||||    
T  29098058 gaaatgacttatattacaaggggtaaagacctattaa 29098022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4151 - 4208
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| |||||||||||||||||| ||||||||||||    
T  4151 ttacaggggggaaaaccggaaatgacctatattacagggggtaaagacctattaaccc 4208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12936224 - 12936167
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||||  ||||||||||    
T  12936224 ttacaggggagaaaactggaaatgacctatattacaggaggtaaaacactattaaccc 12936167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29309622 - 29309565
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| |||||||||||||||||| ||||||||||||    
T  29309622 ttacaggggggaaaaccggaaatgacctatattacagggggtaaagacctattaaccc 29309565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 4482085 - 4482045
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  4482085 ggaaatgacatatattacagggggtaaaaacctattaaccc 4482045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 29309791 - 29309831
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  29309791 ggaaatgacctatattacagggggtaaaaacctattaaccc 29309831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 43945207 - 43945159
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaattagaat 68  Q
    ||||||| |||||||||||||||||| |||||||||||||||| |||||    
T  43945207 aaatgacatatattacagggggtaaagacctattaacccaaataagaat 43945159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 27543642 - 27543685
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  27543642 ggaaatgacctatattacagggggtaaagacctattaacccaaa 27543685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 39451543 - 39451505
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  39451543 aaatgacttatattagagggggtaaaaacctattaaccc 39451505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 960514 - 960555
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  960514 ggaaatgacctatattacagggggtaaagacctattaaccca 960555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 24971015 - 24970963
Alignment:
Q  7 gggagataactggaaatgacttatattacag-ggggtaaaaacctattaaccc 58  Q
    |||||| ||| |||||||||||||||||||| |||||||| ||||||||||||    
T  24971015 gggagaaaaccggaaatgacttatattacaggggggtaaagacctattaaccc 24970963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 25277723 - 25277763
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  25277723 ggaaatgacctatattacagggggtaaagacctattaaccc 25277763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 2873784 - 2873827
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaatt 63  Q
    |||||||||||||||||||||||||||  |||||||||| ||||    
T  2873784 aaatgacttatattacagggggtaaaacactattaaccctaatt 2873827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 4482299 - 4482338
Alignment:
Q  20 aaatgacttatattacaggggg-taaaaacctattaaccc 58  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  4482299 aaatgacttatattacagggggttaaaaacctattaaccc 4482338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 6952912 - 6952959
Alignment:
Q  11 gataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||| |||||||||| ||||||||||||| |||| ||||||||||||    
T  6952912 gataattggaaatgacatatattacaggggataaagacctattaaccc 6952959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32684619 - 32684560
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacag-ggggtaaaaacctattaaccca 59  Q
    ||||||||| || ||| |||||||||||||||||||| |||||||||  |||||||||||    
T  32684619 ttacaggggggaaaaccggaaatgacttatattacaggggggtaaaagactattaaccca 32684560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 34985340 - 34985379
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  34985340 gaaatgacctatattacagggggtaaagacctattaaccc 34985379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 43400710 - 43400671
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  43400710 gaaatgacatatattacagggggtaaagacctattaaccc 43400671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 1600109 - 1600071
Alignment:
Q  26 cttatattacagggggtaaaaacctattaacccaaatta 64  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  1600109 cttatattacagggggtaaagacctattaaccccaatta 1600071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 14329619 - 14329657
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  14329619 aaatgacctatattacagggggtaaagacctattaaccc 14329657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 29726145 - 29726103
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    |||||||| ||||||||| |||||||||||||||||| |||||    
T  29726145 gaaatgacctatattacatggggtaaaaacctattaatccaaa 29726103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 40652659 - 40652621
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaac 56  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  40652659 ggaaatgacctatattacagggggtaaagacctattaac 40652621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12330390 - 12330333
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||  | |||| ||||| || |||||||||||||||||| ||||||||||||    
T  12330390 ttacagggggaaaaactagaaataacctatattacagggggtaaagacctattaaccc 12330333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25277530 - 25277469
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacaggggg-taaaaacctattaacccaaa 61  Q
    ||||||||| || | | ||||||||| |||||||||||||| |||| |||||||||||||||    
T  25277530 ttacaggggggaaacccggaaatgacatatattacaggggggtaaagacctattaacccaaa 25277469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34227384 - 34227327
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| || | ||| ||||||||| |||||||||||||||||||  ||||||||||    
T  34227384 ttacaggagataaaaccggaaatgacctatattacagggggtaaaacactattaaccc 34227327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38711940 - 38711997
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||  | ||||| ||||||| |||||||||||||||||||  ||||||||||    
T  38711940 ttacagggggtaaaactgaaaatgacctatattacagggggtaaaacactattaaccc 38711997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8315983 - 8316038
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacc 57  Q
    ||||||||| || |||| |||||||  |||| |||||||||||||||||||||||||    
T  8315983 ttacagggggga-aactagaaatgatctataatacagggggtaaaaacctattaacc 8316038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 9513868 - 9513828
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||| || |||||||||    
T  9513868 ggaaatgacctatattacagggggtaaagacatattaaccc 9513828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 16009865 - 16009904
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaa 60  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  16009865 aaatgacttatattacagggggtaaaca-ctattaacccaa 16009904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18367260 - 18367300
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacaggggg 41  Q
    |||||||||||| ||| ||||||||| ||||||||||||||    
T  18367260 ttacaggggagaaaaccggaaatgacctatattacaggggg 18367300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11721584 - 11721641
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||  ||||||||||    
T  11721584 ttacaggggggaaaactggaaatgacttatattacaaggggtaaaagactattaaccc 11721641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 29104495 - 29104444
Alignment:
Q  7 gggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||| ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  29104495 gggagaaaactgaaaatgacctatattacagggggtaaagacctattaaccc 29104444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22642322 - 22642380
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacag-ggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||||||||||||| |||||||||| |||||||| ||||||||||||    
T  22642322 ttacaggggggaaaactggaaatgacctatattacagaggggtaaagacctattaaccc 22642380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10976748 - 10976804
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||| |||||||||||||||||| ||||||||||||    
T  10976748 ttacagggg-gaaaaccggaaatgacctatattacagggggtaaagacctattaaccc 10976804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 2870901 - 2870945
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaacccaaat 62  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  2870901 ggaaatgacctatattacaggaggtaaagacctattaacccaaat 2870945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12399586 - 12399645
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaa 60  Q
    ||||||||| || ||| | |||| || |||||||||||||||||| ||||||||||||||    
T  12399586 ttacaggggggaaaaccgaaaataacctatattacagggggtaaagacctattaacccaa 12399645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 12823732 - 12823775
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaatt 63  Q
    ||||||| |||||| |||| ||||||||||||||||||||||||    
T  12823732 aaatgacctatattgcaggaggtaaaaacctattaacccaaatt 12823775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 22551560 - 22551522
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  22551560 aaatgacctatattacagggggtaaagacctattaaccc 22551522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36992983 - 36993041
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    |||||||||  | ||| ||||||||| |||||||||| ||||||| |||||||||||||    
T  36992983 ttacagggggaaaaaccggaaatgacctatattacagagggtaaagacctattaaccca 36993041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39418951 - 39419013
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacaggggg-taaaaacctattaacccaaat 62  Q
    |||||| || || ||| ||||||||| |||||||||||||| |||| ||||||||||||||||    
T  39418951 ttacagaggggaaaaccggaaatgacctatattacaggggggtaaagacctattaacccaaat 39419013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12148226 - 12148283
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||  | ||| ||||||||| |||||||||||||||||||  ||||||||||    
T  12148226 ttacagggggtaaaaccggaaatgacctatattacagggggtaaaacactattaaccc 12148283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 16504777 - 16504716
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacaggggg-taaaaacctattaacccaaa 61  Q
    |||||||||| | ||| ||||||||||||||| || ||||| |||| |||||||||||||||    
T  16504777 ttacaggggaaaaaaccggaaatgacttatataacggggggataaagacctattaacccaaa 16504716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17886021 - 17886078
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||  || ||||| ||||||| |||||||||||||||||||  ||||||||||    
T  17886021 ttacagggtggaaaactgaaaatgacctatattacagggggtaaaatactattaaccc 17886078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 21039922 - 21039865
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||| ||| | ||||| ||||||| |||||||||||||||||||  ||||||||||    
T  21039922 ttacagaggataaaactgaaaatgacctatattacagggggtaaaacactattaaccc 21039865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 26524624 - 26524681
Alignment:
Q  5 aggggagataactggaaatgacttatattacagggggtaaaaac-ctattaacccaaa 61  Q
    ||||| || ||||||||||||| |||||||||||||  |||||| |||||||||||||    
T  26524624 aggggcgaaaactggaaatgacatatattacaggggtgaaaaacactattaacccaaa 26524681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 30916521 - 30916480
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||| ||||||| |||||||||||| |||||||||||||    
T  30916521 aaatgacatatattatagggggtaaaaaactattaacccaaa 30916480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 31861744 - 31861789
Alignment:
Q  19 gaaatgacttatattaca-gggggtaaaaacctattaacccaaatt 63  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||    
T  31861744 gaaatgacatatattacaagggggtaaagacctattaacccaaatt 31861789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33658928 - 33658871
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacag-ggggtaaaaacctattaacc 57  Q
    ||||||||| || ||| ||||||||| |||||||||| |||||||| |||||||||||    
T  33658928 ttacaggggggaaaaccggaaatgacctatattacaggggggtaaagacctattaacc 33658871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 34648727 - 34648768
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    ||||||||||||||||||||||| |||||  |||||||||||    
T  34648727 ggaaatgacttatattacaggggataaaacactattaaccca 34648768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 4413967 - 4413927
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||||  ||||||||||    
T  4413967 ggaaatgacctatattacagggggtaaaacactattaaccc 4413927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 8855699 - 8855739
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  8855699 ggaaatgacttatattacaggaggtaaaacactattaaccc 8855739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 11721323 - 11721255
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacag-ggggtaaaaacctattaacccaaattagaat 68  Q
    |||||||||  | ||||||||||||| |||||||||| |||||||||  ||||||||||  ||||||||    
T  11721323 ttacagggggtaaaactggaaatgacctatattacagaggggtaaaacactattaacccttattagaat 11721255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 31861531 - 31861491
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| ||||||||||||| |||| ||||||||||||    
T  31861531 ggaaatgacctatattacaggggataaagacctattaaccc 31861491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 31920117 - 31920057
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||||| || ||  |||||| || |||||||||||||||||||  |||||||||||||    
T  31920117 ttacaggggggaaaagcggaaataacctatattacagggggtaaaacactattaacccaaa 31920057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 34407915 - 34407951
Alignment:
Q  23 tgacttatattacagggggtaaaaacctattaaccca 59  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  34407915 tgacttatattacagggggtaaataccttttaaccca 34407951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41123201 - 41123161
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacaggggg 41  Q
    ||||||||| || ||| ||||||||||||||||||||||||    
T  41123201 ttacaggggggaaaaccggaaatgacttatattacaggggg 41123161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 63349 - 63409
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||||  |||||||||||||    
T  63349 ttacaggggataaaaccggaaatgacctatattacagggggtaaaacactattaacccaaa 63409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5330477 - 5330417
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||||| || ||||| ||||||| |||||||||  |||||||||||||||||||||||    
T  5330477 ttacaggggtgaaaactgaaaatgacctatattacatagggtaaaaacctattaacccaaa 5330417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 51470164 - 51470126
Alignment:
Q  23 tgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  51470164 tgacttatattacagggggtaaagacctattaacccaaa 51470126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5932280 - 5932337
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || ||| ||||||||||||||||| |||||||||||  ||||||||||    
T  5932280 ttacaggggggaaaaccggaaatgacttatattatagggggtaaaagactattaaccc 5932337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13545636 - 13545579
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||  | ||| ||||||||| |||||||||||||||||| ||||||||||||    
T  13545636 ttacagggggaaaaaccggaaatgacatatattacagggggtaaagacctattaaccc 13545579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22604662 - 22604719
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||| | ||| ||||||||| ||||||||||||| |||| ||||||||||||    
T  22604662 ttacaggggaaaaaaccggaaatgacctatattacaggggttaaagacctattaaccc 22604719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24987664 - 24987608
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||| ||||||||||||    
T  24987664 ttacaggggaaa-aaccggaaatgacctatattacagggggtaaagacctattaaccc 24987608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 35034301 - 35034354
Alignment:
Q  7 gggagataactggaaatgacttatattacagggggtaaaaacctattaacccaa 60  Q
    |||||| ||| ||||||||| ||||||||||||| |||| ||||||||||||||    
T  35034301 gggagaaaaccggaaatgacctatattacaggggataaagacctattaacccaa 35034354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 47021876 - 47021831
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaacccaaatta 64  Q
    ||||||||||||||||| ||||||||| |||||||||||| |||||    
T  47021876 gaaatgacttatattacggggggtaaagacctattaaccctaatta 47021831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5348220 - 5348160
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||||| || ||  ||||||||| |||||||||| ||||||| |||||||||||||||    
T  5348220 ttacaggggtgacaatcggaaatgacctatattacagagggtaaagacctattaacccaaa 5348160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 7112532 - 7112492
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaa 60  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  7112532 aaatgacatatattacagggggtaaagacctattaacccaa 7112492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 18458819 - 18458859
Alignment:
Q  18 ggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  18458819 ggaaatgacctatattacagggggtaaagacctattaaccc 18458859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44826138 - 44826078
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    |||||||||||| ||| | ||||||| | |||||||||||||||| || ||||||||||||    
T  44826138 ttacaggggagaaaaccgaaaatgacctctattacagggggtaaagacttattaacccaaa 44826078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 10027995 - 10028034
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  10027995 gaaatgacctatattacagggggtaaagacctattaaccc 10028034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 30659426 - 30659465
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  30659426 gaaatgacatatattacagggggtaaagacctattaaccc 30659465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42736822 - 42736880
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaa 60  Q
    ||||||||| || ||| ||||||||| ||||||||||||| |||| ||||||||||||||    
T  42736822 ttacagggg-gaaaaccggaaatgacctatattacaggggataaagacctattaacccaa 42736880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 4646795 - 4646757
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  4646795 aaatgacttatattagagggggtaaagacctattaaccc 4646757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 7112739 - 7112777
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaacc 57  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  7112739 gaaatgacatatattacagggggtaaagacctattaacc 7112777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 47022088 - 47022126
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  47022088 aaatgacctatattacagggggtaaagacctattaaccc 47022126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 15336413 - 15336372
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||| |||||||||||||||||| ||||||||| |||||    
T  15336413 aaatgacctatattacagggggtaaagacctattaatccaaa 15336372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 16698926 - 16698869
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||| | ||| ||||||||  |||||||||| ||||||| ||||||||||||    
T  16698926 ttacaggggaaaaaaccggaaatgatctatattacagagggtaaagacctattaaccc 16698869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 21853455 - 21853418
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaac 56  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  21853455 gaaatgacctatattacagggggtaaagacctattaac 21853418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 27265741 - 27265704
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacc 57  Q
    |||||||||||||||||||||||||||  |||||||||    
T  27265741 aaatgacttatattacagggggtaaaacactattaacc 27265704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 28797361 - 28797418
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||| |  |||||||||    
T  28797361 ttacaggggaaaaaaccggaaatgacctatattacagggggtaaagatttattaaccc 28797418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 46136124 - 46136083
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||||| |||||||||||||||||| || ||||||||||||    
T  46136124 aaatgacctatattacagggggtaaagacttattaacccaaa 46136083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 47220950 - 47220913
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacc 57  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  47220950 aaatgacttatattgcaggggataaaaacctattaacc 47220913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 2059444 - 2059480
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaa 55  Q
    |||||||| |||||||||||||||||| |||||||||    
T  2059444 gaaatgacctatattacagggggtaaagacctattaa 2059480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 8928847 - 8928815
Alignment:
Q  26 cttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||||||||||||||| ||||||||||||    
T  8928847 cttatattacagggggtaaagacctattaaccc 8928815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13738506 - 13738462
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaa 45  Q
    |||||||||  | ||||||||||||| ||||||||||||||||||    
T  13738506 ttacagggggaaaaactggaaatgacctatattacagggggtaaa 13738462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 21853617 - 21853557
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacccaaa 61  Q
    ||||| ||| || ||| ||||||||| ||||||| |||||||||||  |||||||||||||    
T  21853617 ttacatgggggaaaaccggaaatgacctatattatagggggtaaaacactattaacccaaa 21853557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 28410952 - 28410908
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaatta 64  Q
    ||||||| ||||||||||||| |||| |||||||||||| |||||    
T  28410952 aaatgacctatattacaggggataaagacctattaaccctaatta 28410908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 29018615 - 29018647
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctat 52  Q
    |||||||||||||||||||||||||| ||||||    
T  29018615 aaatgacttatattacagggggtaaagacctat 29018647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 40091720 - 40091748
Alignment:
Q  17 tggaaatgacttatattacagggggtaaa 45  Q
    |||||||||||||||||||||||||||||    
T  40091720 tggaaatgacttatattacagggggtaaa 40091748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 460
Target Start/End: Complemental strand, 106 - 43
Alignment:
Q  397 acaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgata 460  Q
    ||||||||||  |||||| |||||| |  |||||||||||| ||||||||||||||||||||||    
T  106 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatacttgata 43  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 228 - 189
Alignment:
Q  211 aattgatttttgctcggccattgttttacaatctttcatt 250  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  228 aattgatttttgctccgccattgttttaccatctttcatt 189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 4446 - 4489
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaaatt 63  Q
    ||||||| |||||||||||||||||| |||||||||||||||||    
T  4446 aaatgacctatattacagggggtaaagacctattaacccaaatt 4489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 10393 - 10355
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  10393 aaatgacttatattagagggggtaaaaacctattaaccc 10355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 91106 - 91050
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    ||||||||| || |||| |||||||| |||||||||||||||||| ||||||||||||    
T  91106 ttacagggg-gaaaactagaaatgacctatattacagggggtaaagacctattaaccc 91050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 463
Target Start/End: Original strand, 7878 - 7974
Alignment:
Q  367 tcatatacaagataaactgttgtcttcttcacaatgaaatcattctcaaaaacaaaatgaacctccactttgttaccaggttctatacttgatacta 463  Q
    ||||||| |||||||| |||||| |  ||| |||||||| | | | ||||||||| |  ||||||||||||||| || ||||||| |||||||||||    
T  7878 tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatacta 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 44447 - 44392
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaacc 57  Q
    |||||||||| | ||| ||||||||||||||||||| |||||||| |||||||||||    
T  44447 ttacaggggaaa-aaccggaaatgacttatattacaaggggtaaagacctattaacc 44392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 26346 - 26306
Alignment:
Q  20 aaatgacttatattacagggggtaaaaacctattaacccaa 60  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  26346 aaatgacctatattacagggggtaaagacctattaacccaa 26306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 7898 - 7859
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaaccc 58  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  7898 gaaatgacatatattacagggggtaaagacctattaaccc 7859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 8113 - 8157
Alignment:
Q  19 gaaatgacttatattacagggggtaaaaacctattaacccaaatt 63  Q
    |||||||| |||||||||| ||||||| |||||||||||| ||||    
T  8113 gaaatgacctatattacagtgggtaaagacctattaaccctaatt 8157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3703 - 3646
Alignment:
Q  1 ttacaggggagataactggaaatgacttatattacagggggtaaaaacctattaaccca 59  Q
    |||||||||| | ||||||||||||| ||||||||||||| ||||  ||||||||||||    
T  3703 ttacaggggaaa-aactggaaatgacctatattacaggggataaatgcctattaaccca 3646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University