View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10492_high_10 (Length: 203)
Name: NF10492_high_10
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10492_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 2786088 - 2785917
Alignment:
| Q |
19 |
aatacctaatgtgaatgtgactcctgctactgtaaaagttgagccagtgcctgtaaaagttgagccattgccggtaaaagttgagcgtggcgtaaaaatt |
118 |
Q |
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| T |
2786088 |
aatacctaatgtcagtgtgactcctgctactgtaaaagctgagccagtgcctgtaaaagttgagccattgccggtaaaagttgagcgtgtcgtaaaaatt |
2785989 |
T |
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| Q |
119 |
gagcgtggcacggcattttctggaccatcagtaattactagttcgggatatcttactgcttctacacaggtt |
190 |
Q |
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|||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2785988 |
gagcgtggcacgacatcttctggaccgccagtaattactagttcgggatatcttactgcttctacacaggtt |
2785917 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 22520289 - 22520342
Alignment:
| Q |
137 |
tctggaccatcagtaattactagttcgggatatcttactgcttctacacaggtt |
190 |
Q |
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|||||||| |||||||| |||||||| |||| ||||||||||||| |||||||| |
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| T |
22520289 |
tctggaccgtcagtaataactagttctggatctcttactgcttctgcacaggtt |
22520342 |
T |
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