View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10492_high_2 (Length: 454)
Name: NF10492_high_2
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10492_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 39954123 - 39954559
Alignment:
| Q |
1 |
gaaattaattgaaggagatgcagattcctttgcacaaagagctgagatgttttacaagaagaggccagagcttgtgagcatggttgaagatttctatagg |
100 |
Q |
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| T |
39954123 |
gaaattaattgaaggagatgcagattcctttgcacaaagagctgagatgttttacaagaagaggccagagcttgtgagcatggttgaagatttctatagg |
39954222 |
T |
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| Q |
101 |
aaacaccgcttgttagcagaacggtttgatcaagtcaggcctgaatccggaattcgcctgctcaccccttctgcttcacttaagcattctcaaccagaga |
200 |
Q |
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| T |
39954223 |
aaacaccgcttgttagctgaacggtttgatcaagtcaggcctgaatccggaattcgcctgctcaccccttctgcttcacttaagcattctcaaccagaga |
39954322 |
T |
|
| Q |
201 |
agttggtgagttttgatgatgatcgtgggtatgatagctattctgagagttgtgatgtggaggaatctgtgaaatcggaaattgatgatcctgagcatga |
300 |
Q |
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| T |
39954323 |
agttggtgagttttgatgatgatcgtgggtatgatagctattctgagagttgcgatgtagaggaatctgtgaaatcggaaattgatgatcctgagcatga |
39954422 |
T |
|
| Q |
301 |
agaggaagttcagtctgtggatgcaaatgaagtgatgaagctgacaagcgaaactgagagactcggtgaagagaagaaaactcataaggaacacatcaag |
400 |
Q |
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| T |
39954423 |
agaggaagttcagtccgtggatgcaaatgaagtgatgaagctgacaagcgaaactgagagactcggtgaagagaagaaaactcataaggaacacatcaag |
39954522 |
T |
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| Q |
401 |
cagaaagatgacattcttgatgaagtaatgaaattaa |
437 |
Q |
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| T |
39954523 |
cagaaagatgacattcttgatgaagtaatgaaattaa |
39954559 |
T |
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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 43948620 - 43948528
Alignment:
| Q |
5 |
ttaattgaaggagatgcagattcctttgcacaaagagctgagatgttttacaagaagaggccagagcttgtgagcatggttgaagatttctat |
97 |
Q |
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|||||||||| ||||||||||||||||||| || | || ||||||| |||||||||| | || || ||||| ||||||||||||||||||||| |
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| T |
43948620 |
ttaattgaagaagatgcagattcctttgcaaaacgtgcagagatgtattacaagaagcgacccgaacttgttagcatggttgaagatttctat |
43948528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 43948389 - 43948316
Alignment:
| Q |
230 |
tatgatagctattctgagagttgtgatgtggaggaatctgtgaaatcggaaattgatgatcctgagcatgaaga |
303 |
Q |
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| T |
43948389 |
tatgatacctattctgagaattttgacgtagacgagtctatggaatccgaagttgatgatcctgagcatgaaga |
43948316 |
T |
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