View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10492_high_4 (Length: 359)
Name: NF10492_high_4
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10492_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 353
Target Start/End: Original strand, 705271 - 705618
Alignment:
| Q |
2 |
tctgaagcagttgttgcataaatgtctatccattcagaattagagtctctatgcagtgtctaggtaggcactgaaactcaacatattgaagtttaaattt |
101 |
Q |
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| T |
705271 |
tctgaagcagttgttgcacaaatgtctatcacttcagaattagaatctctatgcagtgt------aggcactgaaactcaacatattgaagttcaagttt |
705364 |
T |
|
| Q |
102 |
tcttgccttaagattccattaactaactaatcatag--cattactcttattcaatttcacagatgaagcttgtaggaaaatatgccttctgacacatcta |
199 |
Q |
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| T |
705365 |
tcttgccttcagatttgattaattaa----tcatagaacattactcttattcagtttcacagttgaagcttataggaaaatatgccttttgacacatcta |
705460 |
T |
|
| Q |
200 |
acattttaggatctttgcggcgcttaggtaaaatcttcggtttctgaagattt---cgcacaacagtatctattgcagacaccgctaatagaaataagtt |
296 |
Q |
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| T |
705461 |
acgttttaggatctctgcggcgctcaggtaaaatcttcggtttctgaagatttatctgcacaacactatctattgcagacaccgctaatagaaataagtt |
705560 |
T |
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| Q |
297 |
tggtttgcagaatctttcagattgaggac---agtaaatttcaaaattcaagaacctttt |
353 |
Q |
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| T |
705561 |
tggtttgcagaatc--tcagattgaggacttaagtaaatttcaaaattcaagaacctttt |
705618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 704824 - 704747
Alignment:
| Q |
225 |
aggtaaaatcttcggtttctgaagatttc---gcacaacagtatctattgcagacaccgctaatagaaataagtttgg |
299 |
Q |
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| T |
704824 |
aggtaaaatcttcggtttctgaagatttctctgcacaacactgtctactgcagacactgctaatagaaataagtttgg |
704747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 23685566 - 23685384
Alignment:
| Q |
1 |
gtctgaagcagttgttgcataaatgtctatccattcagaattagagtctctatgcagtgtctaggtaggcactgaaactcaacatattgaagtttaaatt |
100 |
Q |
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||||||||||||||||||| |||||||||||| ||| |||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||| || || |
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| T |
23685566 |
gtctgaagcagttgttgcacaaatgtctatcccttccgaatcagaatctctatgtagtgtctaggtaggcactgcaactcaacatattgaagttcaagtt |
23685467 |
T |
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| Q |
101 |
ttcttgccttaagattccattaactaactaatcatagcattactcttattcaatttcacagatgaagcttgtaggaaaatatgcc |
185 |
Q |
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| T |
23685466 |
ttcttgctttaagatttgattaattaa-tcat-atagcattactcttattcagtttcacaaatgaagcttataggaaaatatgcc |
23685384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 252
Target Start/End: Complemental strand, 23746481 - 23746241
Alignment:
| Q |
4 |
tgaagcagttgttgcataaatgtctatccattcagaattagagtctctatgcagtgtctaggtaggcactgaaactcaacatattgaagtttaaattttc |
103 |
Q |
| |
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||||| |||||||||| ||||| |||||| |||||| || || ||||||||||||||||||||||| ||| ||||||| |||||| | ||| | || || |
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| T |
23746481 |
tgaaggagttgttgcagaaatgcctatcccttcagagtttgaatctctatgcagtgtctaggtaggaactaaaactcatcatatttatgttccagttgtc |
23746382 |
T |
|
| Q |
104 |
ttgccttaagattccattaactaactaatcatagcattactcttattcaatttcacagatgaagcttgtaggaaaatatgccttctgacacatctaacat |
203 |
Q |
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|||| | |||| ||||| | || |||||||||| | |||| ||||||||||||||||| ||||||||||||||||||||||| ||| || | |
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| T |
23746381 |
atgccctgggattggattaattcac-------agcattactcatgttcagtttcacagatgaagcttataggaaaatatgccttctgacacgtctcacgt |
23746289 |
T |
|
| Q |
204 |
tttaggatctttgcggcgcttaggtaaaatcttcggtttctgaagattt |
252 |
Q |
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| T |
23746288 |
ttttggatctctgtggtgcccaggtaaaatcttc-gtttctgaatattt |
23746241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 23685380 - 23685312
Alignment:
| Q |
286 |
agaaataagtttggtttgcagaatctttcagattgaggac---agtaaatttcaaaattcaagaacctt |
351 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
23685380 |
agaaataagtcaggtttgcagaatctttcagattgaggacttaagtatatttcaaaattcaagaacctt |
23685312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 19565581 - 19565617
Alignment:
| Q |
282 |
taatagaaataagtttggtttgcagaatctttcagat |
318 |
Q |
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| T |
19565581 |
taatagaaataagtttggtttgcagaatctttcagat |
19565617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 23685248 - 23685212
Alignment:
| Q |
134 |
atagcattactcttattcaatttcacagatgaagctt |
170 |
Q |
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| T |
23685248 |
atagcattactcttattcagtttcacagatgaagctt |
23685212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 23702560 - 23702590
Alignment:
| Q |
138 |
cattactcttattcaatttcacagatgaagc |
168 |
Q |
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| T |
23702560 |
cattactcttattcaatttcacagatgaagc |
23702590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 23746018 - 23745982
Alignment:
| Q |
282 |
taatagaaataagtttggtttgcagaatctttcagat |
318 |
Q |
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|||||||| ||||||||| |||||||||||||||||| |
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| T |
23746018 |
taatagaactaagtttggcttgcagaatctttcagat |
23745982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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