View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10492_high_5 (Length: 332)
Name: NF10492_high_5
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10492_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 51114317 - 51114020
Alignment:
| Q |
19 |
acacacacaaataaaaacatctagtctagcgtataatataataaaagggataaataagttatatccgtaactaaatacatatatgtaagttgacatttat |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51114317 |
acacacacaaataaaaacatctagtctagcatataatataataaaagggataaataagttaaatccgtaactaaatacatatatgtaagttgacatttat |
51114218 |
T |
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| Q |
119 |
aaaataaattaatttctcatataagtaaatccgtaaacaacaaacaacttgcatttcagagtttatacttcagaagagttgtttcatgtttcagacagct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51114217 |
aaaataaattaatttctcatataagtaaatccgtaatcaacaaacaacttgcatttcagagtttatacttcagcagagttgtttcatgtttcagacagct |
51114118 |
T |
|
| Q |
219 |
accaaacaaagcagttgtggctcaagtagaatttcattttctcggttgaatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51114117 |
accaaacaaagcagttgtggctcaagtagaatttcattttctcgcttgaatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaat |
51114020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 55505389 - 55505344
Alignment:
| Q |
271 |
aaaaccaggtggagctgttatttctctcaatgatggccttgaaaat |
316 |
Q |
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|||||||||||| |||||||| | |||||||||||||||||||||| |
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| T |
55505389 |
aaaaccaggtggcgctgttatctttctcaatgatggccttgaaaat |
55505344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 640726 - 640775
Alignment:
| Q |
267 |
aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaat |
316 |
Q |
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| T |
640726 |
aatcaaaaccaggtggagttactatctttctcaatgatggccttgaaaat |
640775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 6006142 - 6006187
Alignment:
| Q |
271 |
aaaaccaggtggagctgttatttctctcaatgatggccttgaaaat |
316 |
Q |
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||||||||||||||| ||||| | ||||||||||||||||| |||| |
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| T |
6006142 |
aaaaccaggtggagcagttatctttctcaatgatggccttgtaaat |
6006187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 32151112 - 32151161
Alignment:
| Q |
267 |
aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaat |
316 |
Q |
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||||| ||| ||||||||| ||||| | |||||||||||||||||||||| |
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| T |
32151112 |
aatcataacgaggtggagcagttatctttctcaatgatggccttgaaaat |
32151161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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