View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10492_low_1 (Length: 606)
Name: NF10492_low_1
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10492_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 16 - 590
Target Start/End: Complemental strand, 35697038 - 35696464
Alignment:
| Q |
16 |
cacagacggtgaaggtccaacatccgaacacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcacattca |
115 |
Q |
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| T |
35697038 |
cacagacggtgaaggtccaacatccgaacacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcacattca |
35696939 |
T |
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| Q |
116 |
ccaccgtaaccgttttttccattaggattataaacataatcattaatcgtcgaatcannnnnnncgctttgtgatcgttgaagcgtcatcatatgcttgg |
215 |
Q |
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| T |
35696938 |
ccaccgtaaccgttttttccattaggattataaacataatcattaatcgtcgaatcatttttttcgctttgtgatcgttgaagcgtcatcatatgcttgg |
35696839 |
T |
|
| Q |
216 |
catcacaattactgttattgtcatagttttgattctgtttgttaggcttcgttatatcataatattcaacagccgaagaactaagctccgaatacatcgg |
315 |
Q |
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| T |
35696838 |
catcacaattactgttattgtcatagttttgattctgtttgttaggcttcgttatatcataatattcaacagccgaagaactaagctccgaatacatcgg |
35696739 |
T |
|
| Q |
316 |
catgcttctcatcgtagcatcgacaacattaacaccaatgttaagaatcccttgtggacgaccagaaggtcgacgaacctgcaaggcaacgaaacgaatc |
415 |
Q |
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| T |
35696738 |
catgcttctcatcgtagcatcaacaacattaacaccaatgttaagaatcccttgtggacgaccagaaggtcgacgaacctgcaaggcaacgaaacgaatc |
35696639 |
T |
|
| Q |
416 |
ttggattttctgttacgaggtaaaagattgttgagatgaacagcgacagttccaatgagaacatcacggagccaagcagaggcatagatttcaatcataa |
515 |
Q |
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| T |
35696638 |
ttggattttctgttacgaggtaaaagattgttgagatgaacagcgacagttccaatgagaacatcacggagccaagcagaggcatagatttcaatcataa |
35696539 |
T |
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| Q |
516 |
tgacagactcttctgataggaggaaatcatcgtcgacgcggaaaacaaatttttcattccaggtagggttgttat |
590 |
Q |
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| T |
35696538 |
tgacagactcttctgataggaggaaatcatcgtcgacgcggaaaacaaatttttcattccaggtagggttgttat |
35696464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 464 - 576
Target Start/End: Original strand, 47725460 - 47725572
Alignment:
| Q |
464 |
gttccaatgagaacatcacggagccaagcagaggcatagatttcaatcataatgacagactcttctgataggaggaaatcatcgtcgacgcggaaaacaa |
563 |
Q |
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| T |
47725460 |
gttccaatgagaatatcacggagccaagcagaattgtagatttcaatcatgataacagaactttctgaattgagaaattcattatcgacgcggaaaacaa |
47725559 |
T |
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| Q |
564 |
atttttcattcca |
576 |
Q |
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|||| |||||||| |
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| T |
47725560 |
atttctcattcca |
47725572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 47725280 - 47725359
Alignment:
| Q |
299 |
agctccgaatacatcggcatgcttctcatcgtagcatcga-caacattaacaccaatgttaagaatcccttgtggacgacc |
378 |
Q |
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||||||||||| | ||||||||||||||||| ||||| |||| | |||||| |||||||||||||||||||||||||| |
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| T |
47725280 |
agctccgaataaagtggcatgcttctcatcgtgctatcgagcaacgt-aacaccgatgttaagaatcccttgtggacgacc |
47725359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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