View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10492_low_20 (Length: 217)
Name: NF10492_low_20
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10492_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 31870458 - 31870666
Alignment:
| Q |
1 |
gaaacctcctgaacagagaaattgctgcattccttcaaaacttcatcaagctccttcaccaaatcctcttgtcctttcgacgcaatcgttaatccgtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870458 |
gaaacctcctgaacagagaaattgctgcattccttcaaaacttcatcaagctccttcaccaaatcctcttgtcctttcgacgcaatcgttaatccgtagc |
31870557 |
T |
|
| Q |
101 |
taagcaaatccgaattatcctcttctttccgacgatctttccgccggaaagataacttactcttttctttttcctcatcgcttgaatcagaatcggaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870558 |
taagcaaatccgaattatcctcttctttccgacgacctttccgccggaaagataacttactcttttctttttcctcatcgcttgaatcagaatcggaatc |
31870657 |
T |
|
| Q |
201 |
attcttctc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
31870658 |
attcttctc |
31870666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University