View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10492_low_21 (Length: 215)
Name: NF10492_low_21
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10492_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 20929893 - 20929833
Alignment:
| Q |
139 |
acgtcctgtaattaatttctgactgaataattcattaattaatgtatttatactttgatat |
199 |
Q |
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| T |
20929893 |
acgttctgtaattaatttctgactgaataattcattaattaatgtatttatacgttgatat |
20929833 |
T |
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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 40897744 - 40897850
Alignment:
| Q |
97 |
aagacttaactttgtatacaatttcattcaagact---tctcctaacgtcctgtaattaatttc---------tgactgaataattcattaattaatgta |
184 |
Q |
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| T |
40897744 |
aagacttaattttgtatacaatttcattcaagacttgatctcctaacgtccggtaattaatttcctacttacgtgactgaataattcattgattaatgta |
40897843 |
T |
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| Q |
185 |
tttatac |
191 |
Q |
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||||||| |
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| T |
40897844 |
tttatac |
40897850 |
T |
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