View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10492_low_3 (Length: 468)
Name: NF10492_low_3
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10492_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Original strand, 44990652 - 44991075
Alignment:
| Q |
20 |
atttggtccttattacgaaaagaaaacaaaaagcatcaaaaccagttgtgacatttatctaatagtctccaattttttcttataaccttatatacaaaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44990652 |
atttggtccttattacgaaaagaaaacaaaaagcatcaaaaccagttgtgacatttatctaatagtctccaattttttcttataaccttatatacaaaat |
44990751 |
T |
|
| Q |
120 |
gnnnnnnnnnnnnnnnnnnctcaaccgtgaaagtgattgaagaccaccaagtaccttccttggtcatggttaggaaggaatatcacaactatcttcacca |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44990752 |
gaaaaaaaaaaaaaaa---ctcaaccgtgaaagtgattgaagaccaccaagtaccttccttggtcatggttaggaaggaatatcacaactatcttcacca |
44990848 |
T |
|
| Q |
220 |
tcatcatcagtttcaatttccatgtcgatgtcttcttcttcttcagcaaaagagtttggtgctaaagaagagcaagaagaaattgaactgttgggttgac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44990849 |
tcatcatcagtttcaatttccatgtcgatgtcttcttcttcttcagcaaaagagtttggtgctaaagaagagcaagaagaaattgagctgttgggttgac |
44990948 |
T |
|
| Q |
320 |
cagaaattgaagtggttggatgtgtcaccggagacttggttcgtgtacttccggctagtgagttccgatgggtaggtcttgcatggttatgatctcctgt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44990949 |
cagaaattgaagtggttggatgtgtcaccggagacttggttcgtgtactaccggctagtgagttccgatgggtaggtcttgcatggttatgatctcctgt |
44991048 |
T |
|
| Q |
420 |
gtatgtcacagtgaacatgtctgcttc |
446 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
44991049 |
gtatgtcacagtgaacatgtctgcttc |
44991075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University