View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10492_low_5 (Length: 444)
Name: NF10492_low_5
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10492_low_5 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 4332946 - 4332520
Alignment:
| Q |
1 |
agtaacctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4332946 |
agtaacctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactc |
4332847 |
T |
|
| Q |
101 |
tgttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgt |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4332846 |
tgttcaaaagattttgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgt |
4332747 |
T |
|
| Q |
201 |
ggttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattctcgactcctgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4332746 |
ggttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattctcgactcctgg |
4332647 |
T |
|
| Q |
301 |
attgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4332646 |
attgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagagat |
4332547 |
T |
|
| Q |
401 |
gtgaagtgaatgatgcgcgagtgtctt |
427 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
4332546 |
gtgaagtgaatgatgcgcgagtgtctt |
4332520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 4323640 - 4323925
Alignment:
| Q |
3 |
taacctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactctg |
102 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||| ||| ||||||| | | |||||||| | | |||| ||| ||| | | | ||| |||| |
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|
| T |
4323640 |
taacctggaatttaggacaacaaatccagcaaggccagccgcaacacgaagctcatttctccactctaacgccatccatttctcctcatgtgaaattctg |
4323739 |
T |
|
| Q |
103 |
ttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgtgg |
202 |
Q |
| |
|
||||| |||||| |||| | ||||||||| ||||| |||||| ||||||||| || |||| ||||||||||||||||||||||| ||||| | ||||| |
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|
| T |
4323740 |
ttcaatagatttagaaatgatttaccaaactcaccagtttgatgacgaacttcagaaggatcgacatcgtagaacacaggcagtacaacctggcctgtgg |
4323839 |
T |
|
| Q |
203 |
ttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaatt |
288 |
Q |
| |
|
|||| || | |||| |||||| |||||||||||||||||| | ||||| ||||||||||| |||||||| | |||||||||| |
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|
| T |
4323840 |
ttctgtgacgcaccattatttgccacaactcttgaagacaccacttggaatcggcgtagttttttgagaagactataacagaaatt |
4323925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 4350509 - 4350370
Alignment:
| Q |
5 |
acctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactctgtt |
104 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| |
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|
| T |
4350509 |
acctggaattcaggacaacaaatcctgcaaggccagcagcatcacgaagtgcgtctctccactttggtaccatgaattcatctccttttaaaactttgtt |
4350410 |
T |
|
| Q |
105 |
caaaagatttcgaaaagctttaccaaagtcacctgtttga |
144 |
Q |
| |
|
||| ||| ||||||||| |||||| |||||||||||| |
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|
| T |
4350409 |
caatgctttttgaaaagcttcaccaaactcacctgtttga |
4350370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 427
Target Start/End: Complemental strand, 4356951 - 4356623
Alignment:
| Q |
99 |
tctgttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtctt |
198 |
Q |
| |
|
|||||||||||||||| |||| | ||||||||||||||| ||||||| ||||||||| || || | ||||| |||||||| ||||||||||| || | | |
|
|
| T |
4356951 |
tctgttcaaaagattttgaaatgatttaccaaagtcaccggtttgacgacgaacttcggaagggtcaacatcatagaacactggcagtaccacttggcct |
4356852 |
T |
|
| Q |
199 |
gtggttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattctcgactcct |
298 |
Q |
| |
|
| || || ||||| ||| ||||| | ||||||| | ||||||||| ||||||||| ||||||||||||||||| | ||||| |||||| || | |
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|
| T |
4356851 |
atagtactgtaacacgacattatttgaaccaactctcgcagacaccatgacgaatcagcatagtttttggagaagacgataacagcaattctagagattt |
4356752 |
T |
|
| Q |
299 |
ggattgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagag |
398 |
Q |
| |
|
||||||||| |||| | | | || ||| | | ||| |||| ||| || |||||||||||||| || |||||||| | | |||||||||| || || |
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|
| T |
4356751 |
cgattgcttggagtaacgatgtggatatgtgctctcctctttcaagcgactgatcgtccttgaagacaataattccggcgttttgaagagagaaagtaag |
4356652 |
T |
|
| Q |
399 |
gtgtgaagtgaatgatgcgcgagtgtctt |
427 |
Q |
| |
|
||||||||||||||||| | |||||||| |
|
|
| T |
4356651 |
atgtgaagtgaatgatgctctagtgtctt |
4356623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 141 - 290
Target Start/End: Original strand, 4129500 - 4129649
Alignment:
| Q |
141 |
ttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgtggttctaaaacactccataatttgcatcaactcttgaaga |
240 |
Q |
| |
|
||||| |||||| || || |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||| || | | |
|
|
| T |
4129500 |
ttgacgacgaacatcagacggataaacatcgtagaacacaggcagtaccacctgtccagtggttctgtaacactccagtatttgaatcaactcctgcata |
4129599 |
T |
|
| Q |
241 |
caccattgcgaatcagcgtagtttttggagaagacaacaacagaaattct |
290 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| |||| || ||||||||| |
|
|
| T |
4129600 |
caccacggtgaatccgcgtagtttttggagaatacaataatagaaattct |
4129649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 427
Target Start/End: Original strand, 4323962 - 4324064
Alignment:
| Q |
325 |
atgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgt |
424 |
Q |
| |
|
||| ||| ||| |||||||| || ||||| |||||||||| || ||||| | | | |||||||||| | ||| |||||| |||||||||||||||||| |
|
|
| T |
4323962 |
atgtgatctcctctttgaagcgactgatcatccttgaaaatgaggattccggcgttctgaagagatgatgtgagatgtgaaatgaatgatgcgcgagtgt |
4324061 |
T |
|
| Q |
425 |
ctt |
427 |
Q |
| |
|
||| |
|
|
| T |
4324062 |
ctt |
4324064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 422
Target Start/End: Complemental strand, 5422401 - 5422082
Alignment:
| Q |
103 |
ttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacacaggcagtaccacctgtcttgtgg |
202 |
Q |
| |
|
|||||||||||| |||| ||||| ||||| ||||| ||||||| ||| ||||| || |||| ||| ||| ||||||| ||||| || | |||| ||| |
|
|
| T |
5422401 |
ttcaaaagattttgaaatgcttttccaaattcaccggtttgacgacgtacttcggatggatctacgtcgaagaacaccggcagaacaatttgtccaatgg |
5422302 |
T |
|
| Q |
203 |
ttctaaaacactccataatttgcatcaactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattctcgactcctggat |
302 |
Q |
| |
|
|||| ||||||||| |||| || |||||| | |||||||||||| ||||| ||||| ||| | ||||| || | | ||| |||| |||| | || |
|
|
| T |
5422301 |
ttctgtgacactccattattttcaacaactcatcaagacaccattgtgaatccgcgtaatttgttgagaaaactatgatagacattcgagactgttcaat |
5422202 |
T |
|
| Q |
303 |
tgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgt |
402 |
Q |
| |
|
|||| |||| |||| | | || ||| ||| ||| |||||||| |||| ||||||| ||||||| ||||||| | |||||||||| | | |||| ||| |
|
|
| T |
5422201 |
tgctcgtaggagtgatgttgaaatgtgatctcctctttgaagcgaatcatcgtccctgaaaactttaattccgtaattttgaagagaagcatagagatgt |
5422102 |
T |
|
| Q |
403 |
gaagtgaatgatgcgcgagt |
422 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
5422101 |
gaagtgaatgatgcacgagt |
5422082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 413
Target Start/End: Complemental strand, 5174143 - 5174031
Alignment:
| Q |
301 |
attgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggt |
400 |
Q |
| |
|
|||||||||||||||| ||| || ||| ||| ||| |||||||| |||| ||||||||| |||||| |||||||| | |||||||||| | | |||| |
|
|
| T |
5174143 |
attgcttgtagtagtgattttgaaatgtgatctcctctttgaagtgaatcatcgtccttaaaaacgctaattccattgttttgaagagaagcgtataggt |
5174044 |
T |
|
| Q |
401 |
gtgaagtgaatga |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5174043 |
gtgaagtgaatga |
5174031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 366
Target Start/End: Original strand, 5358165 - 5358303
Alignment:
| Q |
228 |
caactcttgaagacaccattgcgaatcagcgtagtttttggagaagacaacaacagaaattctcgactcctggattgcttgtagtagtgttttagagatg |
327 |
Q |
| |
|
|||||||| ||||||||||||||| || || || ||| | ||||| || | |||||||||| || || || |||||||| | ||||| ||| || ||| |
|
|
| T |
5358165 |
caactcttcaagacaccattgcgattctgcataatttgttgagaaaacgataacagaaatttgagaatcttgaattgcttgcattagtgattttgaaatg |
5358264 |
T |
|
| Q |
328 |
cgatgtcccctttgaagggaatgatcgtccttgaaaacg |
366 |
Q |
| |
|
||| |||||||||||| |||||||| ||||| |||||| |
|
|
| T |
5358265 |
tgatctcccctttgaagtgaatgatcatccttaaaaacg |
5358303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 5340756 - 5340679
Alignment:
| Q |
99 |
tctgttcaaaagatttcgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaa |
176 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||| || ||||||||| ||| | ||| ||||||| ||||||||||| |
|
|
| T |
5340756 |
tctgttcaaaagattttgaaatgcttttccaaactctcctgtttgatgacgtatttctgagggatcaacatcgtagaa |
5340679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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