View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10492_low_6 (Length: 420)
Name: NF10492_low_6
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10492_low_6 |
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| [»] scaffold0756 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 38840460 - 38840767
Alignment:
| Q |
20 |
ctcagcacatttcaggaagaggtcaacataatcgcggaacgacataaaacagatcaaggtgccattgagttcaaccttaacagtctttccaaggcaccct |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38840460 |
ctcagcacatttcaggaagaggtcaacataatcgcggaaagacataaaacagatcaaggtgccattgagttcaaccttaacagtctttccaaggcaccct |
38840559 |
T |
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| Q |
120 |
gccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtcattttgaacttttccaagtcaggcttaaaggttacctttgtcc |
219 |
Q |
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| T |
38840560 |
gccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtcattttgaacttttccaagtcaggcttaaaggttacctttgtcc |
38840659 |
T |
|
| Q |
220 |
agttctcactagcattgcattcggttatcactggctcagactttgtccccatattgtttgagaaaaccttcataacacaaccaattcacccgatcatcaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38840660 |
agttctcactagcattgcattcggttatcactggctcagactttgtccccatattgtttgagaaaaccttcataacacaaccaattcacccgatcatcaa |
38840759 |
T |
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| Q |
320 |
tacatacc |
327 |
Q |
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|||||||| |
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| T |
38840760 |
tacatacc |
38840767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 9875600 - 9875879
Alignment:
| Q |
20 |
ctcagcacatttcaggaagaggtcaacataatcgcggaacgacataaaacagatcaaggtgccattgagttcaaccttaacagtctttccaaggcaccct |
119 |
Q |
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||||||||||||||||||||| ||| ||||||| ||| ||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9875600 |
ctcagcacatttcaggaagagctcagcataatctttgaaagacttaaaacgaatcactgtgccgttgagttcaaccttaacagtctttccaaggcaccct |
9875699 |
T |
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| Q |
120 |
gccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtcattttgaacttttccaagtcaggcttaaaggttacctttgtcc |
219 |
Q |
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||||| |||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| |||| |
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| T |
9875700 |
gccatgtccagcacacgctttttcatcaaagcaacaacgtcctcttcaagataggtcattttaaacttctccaagtcaggcttaaaggtcaccttggtcc |
9875799 |
T |
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| Q |
220 |
agttctcactagcattgcattcggttatcactggctcagactttgtccccatattgtttgagaaaaccttcataacacaa |
299 |
Q |
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|||||||| |||| || |||| |||||||||||| |||||||| |||||||||||| || ||| ||||||||||||||| |
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| T |
9875800 |
agttctcattagctttacatttggttatcactggatcagacttcttccccatattgtctgtgaacaccttcataacacaa |
9875879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0756
Description:
Target: scaffold0756; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 3773 - 3894
Alignment:
| Q |
87 |
agttcaaccttaacagtctttccaaggcaccctgccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtcattttgaact |
186 |
Q |
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||||||||| ||||||| | |||||||||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||| | ||||| | |||| |
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| T |
3773 |
agttcaaccgtaacagtatcaccaaggcaccctgccatatccagcacacgctttttcatcaaagctacaacgtcctcttcaagacaggtcatctgaaact |
3872 |
T |
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| Q |
187 |
tttccaagtcaggcttaaaggt |
208 |
Q |
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| T |
3873 |
tggttaagtcaggcttaaaggt |
3894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 20098486 - 20098365
Alignment:
| Q |
87 |
agttcaaccttaacagtctttccaaggcaccctgccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtcattttgaact |
186 |
Q |
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||||||||| ||||||| | ||||||||||||||||| |||| ||||||||| ||||||||||| |||| ||||||||||||| | ||||||| |||| |
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| T |
20098486 |
agttcaaccgtaacagtatcaccaaggcaccctgccatgtccagcacacgctttttcatcaaagctacaacgtcctcttcaagacaggtcatttcaaact |
20098387 |
T |
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| Q |
187 |
tttccaagtcaggcttaaaggt |
208 |
Q |
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| T |
20098386 |
tggttaagtcaggcttaaaggt |
20098365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 33371810 - 33371937
Alignment:
| Q |
78 |
gtgccattgagttcaaccttaacagtctttccaaggcaccctgccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtca |
177 |
Q |
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||||| |||||| ||||| ||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||| | || ||||| |||||||| ||| |
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| T |
33371810 |
gtgccgttgagtacaaccgtaacagtctcaccaaggcacactgccatgtccaacacacgctttttcatcaaagctataacgtccttttcaagattcttca |
33371909 |
T |
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| Q |
178 |
ttttgaacttttccaagtcaggcttaaa |
205 |
Q |
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| T |
33371910 |
tatcaaacttatccaagtcaggcttaaa |
33371937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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