View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10492_low_7 (Length: 404)
Name: NF10492_low_7
Description: NF10492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10492_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 48258228 - 48257859
Alignment:
| Q |
18 |
taaacaaattatcttatttcctccgatgaattttccttttgttatatgttcctccccaccaaaacctacatatagattgtttaattctatcacaaattcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48258228 |
taaacaaattatcttatttcctccgatgaattttccttttgttatatgttcctccccaccaaaacctacatatagattgtttaattctatcacaaattcc |
48258129 |
T |
|
| Q |
118 |
ctcgaggaatcaaaaagcaacttataacataggtaggaatatcttggaacgttgtcctgattaaaacagccatactagagaaggataaatgtttttcctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48258128 |
ctcgaggaatcaaaaagcaacttataacataggtaggaatatcttggaacgttgtcctgattaaaacagccatactagagaaggataaatgtttttcctt |
48258029 |
T |
|
| Q |
218 |
tcaccctctcaacttgcttcttatcatttccatgaggaaattgaaaactatgttcttagaatgacatatatgggtaggtgatcataaatactttgctatg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48258028 |
tcaccctctcaacttgcttcttatcatttcca---------tgaaaactttgttcttagaatgacatatatgggtaggtgatcataaatactttgctatg |
48257938 |
T |
|
| Q |
318 |
ttgtcagaatctgaataggcatgtgtaattgaaagttgttcaagttgcttaaaacttatagcttatcatttttcatctc |
396 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48257937 |
ttgtcagaatctgaataagcatgtttaattgaaagttgttcaagttgcttaaaacttatagcttatcatttttcatctc |
48257859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University