View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10493_high_3 (Length: 435)
Name: NF10493_high_3
Description: NF10493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10493_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 39109468 - 39109060
Alignment:
| Q |
18 |
gcatttatctgtcacaccaatccttctgcataccgagtccatagcagattgataatcagagcttgtgaaaagcggtagtttatatttttcggaccattcc |
117 |
Q |
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| T |
39109468 |
gcatttatctgtcacaccaatccttctgcataccgagtccatagcagattgatagtcagagcttgtgaaaagcggtagtttatatttttcggaccattcc |
39109369 |
T |
|
| Q |
118 |
ttcttaacagagtcaggtgttctaacacaagcagcccagtttatagctgaacctccaccgactgttgagccagctaagatcatcattttaccgtcaagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39109368 |
ttcttaacagagtcaggtgttctaacacaagcagcccagtttatagctgaacctccaccgactgttgagccagctaagatcatcattttaccgtcaagag |
39109269 |
T |
|
| Q |
218 |
ttggcatgattccacctgattcatagagttcgttcatcgctgaactttccaaggaagaataatcttgagaaacaaaatactctcctttttctaggatgat |
317 |
Q |
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| T |
39109268 |
ttggcatgattccacctgattcatagagctcgttcatcgctgaactttccaaggaagaataatcttgagaaacaaaatactctcctttttctaggatgat |
39109169 |
T |
|
| Q |
318 |
cactttatgacctgagtttgcaagaattgcagctgcaactcctccgccgctaccggaaccaacaatgacaacatcgcatttgatcttgtacacgttttgc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39109168 |
cactttatgacctgagtttgcaagaattgcagctgcaactcctccgccgctaccggaaccaacaatgacaacatcgcatttgatcttgtacacgttttgc |
39109069 |
T |
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| Q |
418 |
tcttcatct |
426 |
Q |
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| T |
39109068 |
tcttcatct |
39109060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 33522479 - 33522542
Alignment:
| Q |
335 |
ttgcaagaattgcagctgcaactcctccgccgctaccggaaccaacaatgacaacatcgcattt |
398 |
Q |
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||||||||| ||||||||||||||||| |||| ||||||||| ||||| || ||||| ||||| |
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| T |
33522479 |
ttgcaagaacagcagctgcaactcctccaccgcaaccggaaccgacaattaccacatcacattt |
33522542 |
T |
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