View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10493_low_1 (Length: 496)

Name: NF10493_low_1
Description: NF10493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10493_low_1
NF10493_low_1
[»] chr6 (4 HSPs)
chr6 (346-480)||(20690720-20690854)
chr6 (37-305)||(20690895-20691169)
chr6 (41-104)||(278456-278519)
chr6 (39-137)||(29986811-29986909)
[»] chr4 (4 HSPs)
chr4 (44-129)||(17135164-17135247)
chr4 (44-106)||(47023470-47023532)
chr4 (42-137)||(33529323-33529416)
chr4 (39-106)||(22189399-22189466)
[»] chr3 (1 HSPs)
chr3 (44-106)||(27763789-27763851)
[»] chr1 (2 HSPs)
chr1 (44-84)||(36522269-36522309)
chr1 (44-106)||(24801449-24801511)
[»] chr8 (2 HSPs)
chr8 (44-130)||(13468734-13468818)
chr8 (39-78)||(28377721-28377760)
[»] chr5 (1 HSPs)
chr5 (44-106)||(10591995-10592057)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 6e-63; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 346 - 480
Target Start/End: Complemental strand, 20690854 - 20690720
Alignment:
Q  346 tgatggtaccaccaacactataattgtcccattgcaatttcatttttgtctatccatgtgaattttaattaggtataacgttggataccaagtaaatatt 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  20690854 tgatggtaccaccaacactataattgtcccattgcaatttcatttttgtctatccatgtgaattttaattaggtataactttggataccaggtaaatatt 20690755  T
Q  446 tatggtcacctctgattcaattctatagtggtgca 480  Q
    |||||||||||||||||||||||||||||| ||||    
T  20690754 tatggtcacctctgattcaattctatagtgctgca 20690720  T

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Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 37 - 305
Target Start/End: Complemental strand, 20691169 - 20690895
Alignment:
Q  37 aacaacattaaaactcttaggtagagtttgccgtctatttgagtcccaaaaaactcgaaggattagtctcagaaattacgcgcacggaggatactcgatt 136  Q
    |||||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||     
T  20691169 aacaacattaaatctcttaggtagaattttccgtctatttgagtaccaaaaaactcgaaggattagtctcagaaattgcgcacacggaggatacccgatg 20691070  T
Q  137 ttnnnnnnnnnnnnnnnnttagacgactaaataatgattgagattattataat------cttggatttgattttaaatatctcnnnnnnnnnnnnnggat 230  Q
    ||                ||||| ||| |||||||||| |||||||| || ||      |||||||| |||||||||||||||             ||||    
T  20691069 ttaaaaaataaaataaaattagatgaccaaataatgatggagattataatcatagaaaacttggattggattttaaatatctcaaaaaataaaaaaggat 20690970  T
Q  231 ttgattttaaagtcatgtggctaaaaattattccccaccattctctcattatgttgggtagtaaaatgtgctacc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20690969 ttgattttaaagtcatgtggctaaaaattattccccaccattctctcattatgttgggtagtaaaatgtgctacc 20690895  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 278456 - 278519
Alignment:
Q  41 acattaaaactcttaggtagagtttgccgtctatttgagtcccaaaaaactcgaaggattagtc 104  Q
    ||||||||||||||| | ||||||||||||| ||||  |||||| ||||||| | |||||||||    
T  278456 acattaaaactcttatggagagtttgccgtccatttaggtcccacaaaactcaagggattagtc 278519  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 29986811 - 29986909
Alignment:
Q  39 caacattaaaactcttaggtagagtttgccgtctatttgagtcccaaaaaactcgaaggattagtctcagaaattacgcgcacggaggatactcgattt 137  Q
    |||| |||||||||||  | |||||||||||   |||||||||||| |||||||||  ||||| |||| | |||| ||||  |||| ||||||||||||    
T  29986811 caacgttaaaactctttaggagagtttgccgctcatttgagtcccacaaaactcgagagattaatctctgtaattgcgcgtgcggaagatactcgattt 29986909  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 17135164 - 17135247
Alignment:
Q  44 ttaaaactcttaggtagagtttgccgtctatttgagtcccaaaaaactcgaaggattagtctcagaaattacgcgcacggaggata 129  Q
    |||||||||||||| |||||||||||   |||||||||||| || |||||| |||||||||||| || ||  ||||||||||||||    
T  17135164 ttaaaactcttagggagagtttgccgcgcatttgagtcccagaagactcgagggattagtctcaaaagtt--gcgcacggaggata 17135247  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 47023470 - 47023532
Alignment:
Q  44 ttaaaactcttaggtagagtttgccgtctatttgagtcccaaaaaactcgaaggattagtctc 106  Q
    |||||||||||||| |||||||| |||| ||||| |||||| || ||||||||||||||||||    
T  47023470 ttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggattagtctc 47023532  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 33529323 - 33529416
Alignment:
Q  42 cattaaaactcttaggtagagtttgccgtctatttgagtcccaaaaaactcgaaggattagtctcagaaattacgcgcacggaggatactcgattt 137  Q
    |||||||||||||||| |||| |||||| | ||||| |||||| || ||| || ||||||||||| | | ||  |||||||||||||||| |||||    
T  33529323 cattaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagtt--gcgcacggaggatacttgattt 33529416  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 22189466 - 22189399
Alignment:
Q  39 caacattaaaactcttaggtagagtttgccgtctatttgagtcccaaaaaactcgaaggattagtctc 106  Q
    |||||||||||||||||||||||| |||||| |||| || |||||| ||  ||||| | |||||||||    
T  22189466 caacattaaaactcttaggtagagattgccgcctatatgggtcccacaaggctcgaggaattagtctc 22189399  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 27763789 - 27763851
Alignment:
Q  44 ttaaaactcttaggtagagtttgccgtctatttgagtcccaaaaaactcgaaggattagtctc 106  Q
    |||||||||||||| ||||| ||||||| |||||||||||| ||  ||||| |||||||||||    
T  27763789 ttaaaactcttagggagagtctgccgtccatttgagtcccacaatgctcgagggattagtctc 27763851  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 36522309 - 36522269
Alignment:
Q  44 ttaaaactcttaggtagagtttgccgtctatttgagtccca 84  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  36522309 ttaaaactcttagggagagtttgccgtccatttgagtccca 36522269  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 24801449 - 24801511
Alignment:
Q  44 ttaaaactcttaggtagagtttgccgtctatttgagtcccaaaaaactcgaaggattagtctc 106  Q
    |||||||||||||| ||||||| ||||| |||||||||||| || |||| |  ||||||||||    
T  24801449 ttaaaactcttagggagagtttaccgtccatttgagtcccacaagactcaagagattagtctc 24801511  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 13468818 - 13468734
Alignment:
Q  44 ttaaaactcttaggtagagtttgccgtctatttgagtcccaaaaaactcgaaggattagtctcagaaattacgcgcacggaggatac 130  Q
    |||||||||||||  ||||| ||||| | |||||||||||| ||  ||||||||||||||||| | | ||  |||||||||||||||    
T  13468818 ttaaaactcttagagagagtctgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagtt--gcgcacggaggatac 13468734  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 28377721 - 28377760
Alignment:
Q  39 caacattaaaactcttaggtagagtttgccgtctatttga 78  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  28377721 caacattaaaattcttagggagagtttgccgtctatttga 28377760  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 10591995 - 10592057
Alignment:
Q  44 ttaaaactcttaggtagagtttgccgtctatttgagtcccaaaaaactcgaaggattagtctc 106  Q
    |||||||||||||| ||||| ||||| | |||||||||||| ||  ||||| |||||||||||    
T  10591995 ttaaaactcttagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctc 10592057  T

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