View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10493_low_11 (Length: 333)
Name: NF10493_low_11
Description: NF10493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10493_low_11 |
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| [»] scaffold1918 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 11901900 - 11901599
Alignment:
| Q |
17 |
aagagtaaatgtagctatcagaagcagaaaccatagtagtagaaatcaaaacaatggccaatgccattgccatttgtggccaaaaatgccccattttggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901900 |
aagagtaaatgtagctatcagaagcagaaaccatagtagtagaaatcaaaacaatggccaatgccattgccatttgtggccaaaaatgccccattttggg |
11901801 |
T |
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| Q |
117 |
gcaactagccctagcagtcatggatagaaagaaagaagaggttttggtcttagtgtttactatgaaatgttgcatgcaagattcagtatttatagttaga |
216 |
Q |
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| T |
11901800 |
gcaactagccctagcagtcatggatagaaagaa----gaggttttggtcttagtgtttactatgaaatgttgcatgcaagattcagtatttatagttaga |
11901705 |
T |
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| Q |
217 |
gttagttgttaaggggaagctatcatgaaggaccaattccaatattcaatttgttttcattttggtgtaaatgctttaaattaattcttctagtagacca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11901704 |
gttagttgttaaggggaagctatcatgaaggaccaattccaatattcaatttgtttttattttggtgtaaatgctttaaattaattcttctagtaggcca |
11901605 |
T |
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| Q |
317 |
cttctt |
322 |
Q |
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|||||| |
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| T |
11901604 |
cttctt |
11901599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 11879279 - 11879168
Alignment:
| Q |
39 |
agcagaaaccatagtagtagaaatcaaaacaatggccaatgccattgccatttgtggccaaaaatgccccattttggggcaactagccctagcagtcatg |
138 |
Q |
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| T |
11879279 |
agcagaaaccacactagttgaaatcaaaacaatggccaatgccattgccattggtggccagttatgaccccttttggggctactggccttaacagtcatg |
11879180 |
T |
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| Q |
139 |
gatagaaagaaa |
150 |
Q |
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| T |
11879179 |
ggtagaaagaaa |
11879168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 52821930 - 52822028
Alignment:
| Q |
41 |
cagaaaccatagtagtagaaatcaaaacaatggccaatgccattgccatttgtggccaaaaatgccccattttggggcaactagccctagcagtcatgg |
139 |
Q |
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||||||||| ||||||||||| | |||||||||||||||||| ||||| || |||| |||| | ||| || ||||| ||| ||||||||||||||| |
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| T |
52821930 |
cagaaaccactgtagtagaaatgagaacaatggccaatgccatggccatatgcggccgaaaacgaccccttatggggtcactgcccctagcagtcatgg |
52822028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 11879016 - 11878940
Alignment:
| Q |
222 |
ttgttaaggggaagctatcatgaaggaccaattccaatattcaatttgttttcattttggtgtaaatgctttaaatta |
299 |
Q |
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| T |
11879016 |
ttgttaaagggtagccatcatgaaggaccaattcaaatattcaa-ttggtttcattttgatgtaattgcattatatta |
11878940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold1918
Description:
Target: scaffold1918; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 147 - 272
Target Start/End: Original strand, 819 - 940
Alignment:
| Q |
147 |
gaaagaagaggttttggtcttagtgtttactatgaaatgttgcatgcaagattcagtatttatagttagagttagttgttaaggggaagctatcatgaag |
246 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| || ||| ||||||||| ||||||||||||| |
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| T |
819 |
gaaagaagaggttttggttgtagtggttactatgaaatgttgcatgaaagattcagtatttatagt----gtgagtcgttaaggggtagctatcatgaag |
914 |
T |
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| Q |
247 |
gaccaattccaatattcaatttgttt |
272 |
Q |
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| T |
915 |
tacaaattcaaatattctattggttt |
940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 633 - 744
Alignment:
| Q |
39 |
agcagaaaccatagtagtagaaatcaaaacaatggccaatgccattgccatttgtggccaaaaatgccccattttggggcaactagccctagcagtcatg |
138 |
Q |
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||||||||||| || ||| ||||||||||||||| | ||||||||||||||| ||||||| ||| ||| ||||||||| ||| ||| ||||||||||| |
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| T |
633 |
agcagaaaccacagaagtcgaaatcaaaacaatgacgaatgccattgccattggtggccagttatgaccccttttggggctactggccttagcagtcatg |
732 |
T |
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| Q |
139 |
gatagaaagaaa |
150 |
Q |
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| T |
733 |
ggtagaatgaaa |
744 |
T |
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