View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10493_low_12 (Length: 304)
Name: NF10493_low_12
Description: NF10493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10493_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 29047867 - 29047589
Alignment:
| Q |
19 |
ccaaccttgacaatcacatagggatcaaggctaccggtcaaatccatccttggaagatcgcgagctttcacaactcgtacgaaaagatagtccattggtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29047867 |
ccaaccttgacaatcacatagggatcaaggctaccggtcaaatccatccttggaagatcgcgagctttcacaactcgtatgaaaagatagtccattggtt |
29047768 |
T |
|
| Q |
119 |
ctacaaggtcataggtgctgctaggagatttattactcccccgaagaattcttccaccaatgacttttccacctccaagagaaggacttgtctctttgat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29047767 |
ctacaaggtcataggtgctgctaggagaattattactcccgcgaagaattcttccaccaacgacttttccacctccaagagaaggatttgtctctttgat |
29047668 |
T |
|
| Q |
219 |
tacatagtccattgcagacgctgctgtgcctgcaaacgctttaacaactttcggagcagacggtccagatttcatctca |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29047667 |
tacatagtccattgcagacgctgctgtgcctgcaaacgctttaacaactttcggagcagacggtccagatttcatctca |
29047589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University